GO enrichment analyses of chromosomes that underwent lineage-specific changes in deuterostomes [Dataset]

GO enrichment analysis of genes located in the sea star POC9 (a), sea urchin SPU1 (b), hemichordate PFL18 (c), and PFL9 (d). The echinoderm chromosomes (POC12 and SPU3) corresponding to deuterostome DALG R were also analyzed to understand the chordate-specific chromosomal dispersion (e). The enriche...

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Detalhes bibliográficos
Autores: Lin, Che-Yi, Marlétaz, Ferdinand, Pérez-Posada, Alberto, Martínez-García, Pedro Manuel, Schloissnig, Siegfried, Peluso, Paul, Conception, Greg T., Bump, Paul, Chen, Yi-Chih, Chou, Cindy, Lin, Ching-Yi, Fan, Tzu-Pei, Tsai, Chang-Tai, Gómez-Skarmeta, José Luis, Tena, Juan J., Lowe, Christopher J., Rank, David R., Rokhsar, Daniel S., Yu, Jr-Kai, Su, Yi-Hsien
Formato: conjunto de datos
Estado:Versión publicada
Fecha de publicación:2024
País:España
Recursos:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/369045
Acesso em linha:http://hdl.handle.net/10261/369045
Access Level:acceso abierto
Palavra-chave:Transposable elements within
Relatively short transition
Mixing event produced
Level genome assemblies
Assembled microsyntenic blocks
Also provide evidence
Schizocardium californicum </
Ptychodera flava </
Various developmental processes
Orthologous genes distributed
Deuterostome common ancestor
Deuterostome body plans
Specific chromosomal modifications
Exhibit remarkable chromosome
div >< p
2 Hemichordate species
Highly rearranged chromosomes deuterostome alg complement developmental genes specific alg
Deuterostome alg complement
Developmental genes
Specific alg
Rearranged chromosomes
Hemichordate chromosomes
2 chromosomes
n </
Chromosomal architecture
Homologous alg
Deuterostome lineages
Deuterostome algs
Subsequently split
Sea urchins
Scale macrosynteny
Regulatory controls
Monophyletic group
Lower densities
Likely due
Includes hemichordata
Genetic changes
Generate chromosome
Extant hemichordates
Events may
Established via
Different lineages
Delineate lineage
Another chromosome
Ancestral condition
algs ).
3 pre
Descrição
Resumo:GO enrichment analysis of genes located in the sea star POC9 (a), sea urchin SPU1 (b), hemichordate PFL18 (c), and PFL9 (d). The echinoderm chromosomes (POC12 and SPU3) corresponding to deuterostome DALG R were also analyzed to understand the chordate-specific chromosomal dispersion (e). The enriched GO terms (adjusted p-value <0.1) are clustered and divided into different modules, and selected terms are underlined. The top 3 enriched BP GO terms of each module are shown in S17–S19 Figs. The data underlying this figure can be found in S2, S3, and S4 Data. BP, biological process; GO, gene ontology.

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