Pairwise syntenic dot plots and significant associations between deuterostome species [Dataset]

Dot plots (upper panels) showing the chromosomal positions of orthologous gene pairs between 2 species. Statistically corresponding chromosomes are shaded based on significance level in Fisher’s exact test and risk difference. In the scatter plots (lower panels), the circle sizes depict the -log 10...

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Detalles Bibliográficos
Autores: Lin, Che-Yi, Marlétaz, Ferdinand, Pérez-Posada, Alberto, Martínez-García, Pedro Manuel, Schloissnig, Siegfried, Peluso, Paul, Conception, Greg T., Bump, Paul, Chen, Yi-Chih, Chou, Cindy, Lin, Ching-Yi, Fan, Tzu-Pei, Tsai, Chang-Tai, Gómez-Skarmeta, José Luis, Tena, Juan J., Lowe, Christopher J., Rank, David R., Rokhsar, Daniel S., Yu, Jr-Kai, Su, Yi-Hsien
Tipo de recurso: conjunto de datos
Estado:Versión publicada
Fecha de publicación:2024
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/371997
Acceso en línea:http://hdl.handle.net/10261/371997
Access Level:acceso abierto
Palabra clave:Transposable elements within
Relatively short transition
Mixing event produced
Level genome assemblies
Assembled microsyntenic blocks
Also provide evidence
Schizocardium californicum </
Ptychodera flava </
Various developmental processes
Orthologous genes distributed
Deuterostome common ancestor
Deuterostome body plans
Specific chromosomal modifications
Exhibit remarkable chromosome
div >< p
2 Hemichordate species
Highly rearranged chromosomes
Deuterostome alg complement
Developmental genes
Specific alg
Rearranged chromosomes
Hemichordate chromosomes
2 chromosomes
n </
Chromosomal architecture
Homologous alg
Deuterostome lineages
Deuterostome algs
Subsequently split
Sea urchins
Scale macrosynteny
Regulatory controls
Monophyletic group
Lower densities
Likely due
Includes hemichordata
Genetic changes
Generate chromosome
Extant hemichordates
Events may
Established via
Different lineages
Delineate lineage
Another chromosome
Ancestral condition
algs ).
3 pre
Descripción
Sumario:Dot plots (upper panels) showing the chromosomal positions of orthologous gene pairs between 2 species. Statistically corresponding chromosomes are shaded based on significance level in Fisher’s exact test and risk difference. In the scatter plots (lower panels), the circle sizes depict the -log 10 adjusted p-value, with a maximum of 300 for each plot. Adjusted p-values <1E-10, between 1E-5~1E-10 and between 1E-2~1E-5 are marked, respectively, with blue, yellow, and red. Adjusted p-values >1E-2 or risk difference <0 are not shown. For PFL3-1 to PFL3-4 and PFL23-1 to PFL23-2, significance of difference was calculated separately. The data underlying this figure can be found in S1 Data.

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