Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France

The presence of Salmonella in dry fermented sausages is source of recalls and outbreaks. The genomic diversity of 173 Salmonella isolates from the dry fermented sausage production chains (pig carcasses, pork, and sausages) from France and Spain were investigated through their core phylogenomic relat...

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Autores: Ferrer-Bustins, Núria, Yvon, Claire, Martín, Belén, Leclerc, Vincent, Leblanc, Jean-Charles, Corominas, Laura, Sabaté, Sara, Tolosa-Muñoz, Eva, Chacón-Villanueva, Carme, Bover-Cid, Sara, Cadel-Six, Sabrina, Jofré, Anna
Tipo de recurso: artículo
Fecha de publicación:2024
País:España
Institución:Institut de Recerca i Tecnologia Agroalimentàries (IRTA)
Repositorio:IRTA Pubpro. Open Digital Archive
OAI Identifier:oai:repositori.irta.cat:20.500.12327/3012
Acceso en línea:http://hdl.handle.net/20.500.12327/3012
https://doi.org/10.1038/s41598-024-62141-9
Access Level:acceso abierto
Palabra clave:663/664
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spelling Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and FranceFerrer-Bustins, NúriaYvon, ClaireMartín, BelénLeclerc, VincentLeblanc, Jean-CharlesCorominas, LauraSabaté, SaraTolosa-Muñoz, EvaChacón-Villanueva, CarmeBover-Cid, SaraCadel-Six, SabrinaJofré, Anna663/664The presence of Salmonella in dry fermented sausages is source of recalls and outbreaks. The genomic diversity of 173 Salmonella isolates from the dry fermented sausage production chains (pig carcasses, pork, and sausages) from France and Spain were investigated through their core phylogenomic relationships and accessory genome profiles. Ten different serovars and thirteen sequence type profiles were identified. The most frequent serovar from sausages was the monophasic variant of S. Typhimurium (1,4,[5],12:i:-, 72%) while S. Derby was in pig carcasses (51%). Phylogenomic clusters found in S. 1,4,[5],12:i:-, S. Derby, S. Rissen and S. Typhimurium serovars identified closely related isolates, with less than 10 alleles and 20 SNPs of difference, displaying Salmonella persistence along the pork production chain. Most of the S. 1,4,[5],12:i:- contained the Salmonella genomic island-4 (SGI-4), Tn21 and IncFIB plasmid. More than half of S. Derby strains contained the SGI-1 and Tn7. S. 1,4,[5],12:i:- genomes carried the most multidrug resistance genes (91% of the strains), whereas extended-spectrum β-lactamase genes were found in Typhimurium and Derby serovars. Salmonella monitoring and characterization in the pork production chains, specially S. 1,4,[5],12:i:- serovar, is of special importance due to its multidrug resistance capacity and persistence in dry fermented sausages.info:eu-repo/semantics/publishedVersionNature ResearchIndústries AlimentàriesFuncionalitat i Seguretat Alimentària202420242024info:eu-repo/semantics/article14application/pdfhttp://hdl.handle.net/20.500.12327/3012https://doi.org/10.1038/s41598-024-62141-9reponame:IRTA Pubpro. Open Digital Archiveinstname:Institut de Recerca i Tecnologia Agroalimentàries (IRTA)InglésScientific ReportsMICIU/Programa Estatal de I+D+I orientada a los retos de la sociedad/RTI2018-099195-R-I00/ES/EMBUTIDOS FERMENTADOS DE NUEVA GENERACION A TRAVES DE LA APLICACION DE MICROBIOLOGIA PREDICTIVA Y METODOLOGIAS OMICAS/Attribution 4.0 Internationalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessoai:repositori.irta.cat:20.500.12327/30122026-06-16T08:51:17Z
dc.title.none.fl_str_mv Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France
title Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France
spellingShingle Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France
Ferrer-Bustins, Núria
663/664
title_short Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France
title_full Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France
title_fullStr Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France
title_full_unstemmed Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France
title_sort Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France
dc.creator.none.fl_str_mv Ferrer-Bustins, Núria
Yvon, Claire
Martín, Belén
Leclerc, Vincent
Leblanc, Jean-Charles
Corominas, Laura
Sabaté, Sara
Tolosa-Muñoz, Eva
Chacón-Villanueva, Carme
Bover-Cid, Sara
Cadel-Six, Sabrina
Jofré, Anna
author Ferrer-Bustins, Núria
author_facet Ferrer-Bustins, Núria
Yvon, Claire
Martín, Belén
Leclerc, Vincent
Leblanc, Jean-Charles
Corominas, Laura
Sabaté, Sara
Tolosa-Muñoz, Eva
Chacón-Villanueva, Carme
Bover-Cid, Sara
Cadel-Six, Sabrina
Jofré, Anna
author_role author
author2 Yvon, Claire
Martín, Belén
Leclerc, Vincent
Leblanc, Jean-Charles
Corominas, Laura
Sabaté, Sara
Tolosa-Muñoz, Eva
Chacón-Villanueva, Carme
Bover-Cid, Sara
Cadel-Six, Sabrina
Jofré, Anna
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Indústries Alimentàries
Funcionalitat i Seguretat Alimentària
dc.subject.none.fl_str_mv 663/664
topic 663/664
description The presence of Salmonella in dry fermented sausages is source of recalls and outbreaks. The genomic diversity of 173 Salmonella isolates from the dry fermented sausage production chains (pig carcasses, pork, and sausages) from France and Spain were investigated through their core phylogenomic relationships and accessory genome profiles. Ten different serovars and thirteen sequence type profiles were identified. The most frequent serovar from sausages was the monophasic variant of S. Typhimurium (1,4,[5],12:i:-, 72%) while S. Derby was in pig carcasses (51%). Phylogenomic clusters found in S. 1,4,[5],12:i:-, S. Derby, S. Rissen and S. Typhimurium serovars identified closely related isolates, with less than 10 alleles and 20 SNPs of difference, displaying Salmonella persistence along the pork production chain. Most of the S. 1,4,[5],12:i:- contained the Salmonella genomic island-4 (SGI-4), Tn21 and IncFIB plasmid. More than half of S. Derby strains contained the SGI-1 and Tn7. S. 1,4,[5],12:i:- genomes carried the most multidrug resistance genes (91% of the strains), whereas extended-spectrum β-lactamase genes were found in Typhimurium and Derby serovars. Salmonella monitoring and characterization in the pork production chains, specially S. 1,4,[5],12:i:- serovar, is of special importance due to its multidrug resistance capacity and persistence in dry fermented sausages.
publishDate 2024
dc.date.none.fl_str_mv 2024
2024
2024
dc.type.none.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12327/3012
https://doi.org/10.1038/s41598-024-62141-9
url http://hdl.handle.net/20.500.12327/3012
https://doi.org/10.1038/s41598-024-62141-9
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Scientific Reports
MICIU/Programa Estatal de I+D+I orientada a los retos de la sociedad/RTI2018-099195-R-I00/ES/EMBUTIDOS FERMENTADOS DE NUEVA GENERACION A TRAVES DE LA APLICACION DE MICROBIOLOGIA PREDICTIVA Y METODOLOGIAS OMICAS/
dc.rights.none.fl_str_mv Attribution 4.0 International
http://creativecommons.org/licenses/by/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution 4.0 International
http://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 14
application/pdf
dc.publisher.none.fl_str_mv Nature Research
publisher.none.fl_str_mv Nature Research
dc.source.none.fl_str_mv reponame:IRTA Pubpro. Open Digital Archive
instname:Institut de Recerca i Tecnologia Agroalimentàries (IRTA)
instname_str Institut de Recerca i Tecnologia Agroalimentàries (IRTA)
reponame_str IRTA Pubpro. Open Digital Archive
collection IRTA Pubpro. Open Digital Archive
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15,301629

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