Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031

Ralstonia solanacearum is the causative agent of bacterial wilt of potato. Ralstonia solanacearum strain UY031 belongs to the American phylotype IIB, sequevar 1, also classified as race 3 biovar 2. Here we report the completely sequenced genome of this strain, the first complete genome for phylotype...

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Authors: Guarischi-Sousa, R., Puigvert Sànchez, Marina, Coll, Núria S., Siri, María Inés, Pianzzola, María Julia, Valls i Matheu, Marc, Setubal, Joao C.
Format: article
Status:Published version
Publication Date:2016
Country:España
Institution:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)
Repository:Recercat. Dipósit de la Recerca de Catalunya
OAI Identifier:oai:recercat.cat:2445/98905
Online Access:https://hdl.handle.net/2445/98905
Access Level:Open access
Keyword:Patologia vegetal
Uruguai
Bacteris fitopatògens
Plant pathology
Uruguay
Phytopatogenic bacteria
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spelling Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031Guarischi-Sousa, R.Puigvert Sànchez, MarinaColl, Núria S.Siri, María InésPianzzola, María JuliaValls i Matheu, MarcSetubal, Joao C.Patologia vegetalUruguaiBacteris fitopatògensPlant pathologyUruguayPhytopatogenic bacteriaRalstonia solanacearum is the causative agent of bacterial wilt of potato. Ralstonia solanacearum strain UY031 belongs to the American phylotype IIB, sequevar 1, also classified as race 3 biovar 2. Here we report the completely sequenced genome of this strain, the first complete genome for phylotype IIB, sequevar 1, and the fourth for the R. solanacearum species complex. In addition to standard genome annotation, we have carried out a curated annotation of type III effector genes, an important pathogenicity-related class of genes for this organism. We identified 60 effector genes, and observed that this effector repertoire is distinct when compared to those from other phylotype IIB strains. Eleven of the effectors appear to be nonfunctional due to disruptive mutations. We also report a methylome analysis of this genome, the first for a R. solanacearum strain. This analysis helped us note the presence of a toxin gene within a region of probable phage origin, raising the hypothesis that this gene may play a role in this strain's virulence.BioMed Central2016201620162016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion8 p.application/pdfhttps://hdl.handle.net/2445/98905Articles publicats en revistes (Genètica, Microbiologia i Estadística)reponame:Recercat. Dipósit de la Recerca de Catalunyainstname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)InglésReproducció del document publicat a: http://dx.doi.org/10.1186/s40793-016-0131-4Standards in Genomic Sciences, 2016, vol. 11, num. 7, p. 1-8http://dx.doi.org/10.1186/s40793-016-0131-4cc-by (c) Guarischi-Sousa, R. et al., 2016http://creativecommons.org/licenses/by/3.0/esinfo:eu-repo/semantics/openAccessoai:recercat.cat:2445/989052026-05-29T05:05:01Z
dc.title.none.fl_str_mv Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
title Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
spellingShingle Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
Guarischi-Sousa, R.
Patologia vegetal
Uruguai
Bacteris fitopatògens
Plant pathology
Uruguay
Phytopatogenic bacteria
title_short Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
title_full Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
title_fullStr Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
title_full_unstemmed Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
title_sort Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
dc.creator.none.fl_str_mv Guarischi-Sousa, R.
Puigvert Sànchez, Marina
Coll, Núria S.
Siri, María Inés
Pianzzola, María Julia
Valls i Matheu, Marc
Setubal, Joao C.
author Guarischi-Sousa, R.
author_facet Guarischi-Sousa, R.
Puigvert Sànchez, Marina
Coll, Núria S.
Siri, María Inés
Pianzzola, María Julia
Valls i Matheu, Marc
Setubal, Joao C.
author_role author
author2 Puigvert Sànchez, Marina
Coll, Núria S.
Siri, María Inés
Pianzzola, María Julia
Valls i Matheu, Marc
Setubal, Joao C.
author2_role author
author
author
author
author
author
dc.subject.none.fl_str_mv Patologia vegetal
Uruguai
Bacteris fitopatògens
Plant pathology
Uruguay
Phytopatogenic bacteria
topic Patologia vegetal
Uruguai
Bacteris fitopatògens
Plant pathology
Uruguay
Phytopatogenic bacteria
description Ralstonia solanacearum is the causative agent of bacterial wilt of potato. Ralstonia solanacearum strain UY031 belongs to the American phylotype IIB, sequevar 1, also classified as race 3 biovar 2. Here we report the completely sequenced genome of this strain, the first complete genome for phylotype IIB, sequevar 1, and the fourth for the R. solanacearum species complex. In addition to standard genome annotation, we have carried out a curated annotation of type III effector genes, an important pathogenicity-related class of genes for this organism. We identified 60 effector genes, and observed that this effector repertoire is distinct when compared to those from other phylotype IIB strains. Eleven of the effectors appear to be nonfunctional due to disruptive mutations. We also report a methylome analysis of this genome, the first for a R. solanacearum strain. This analysis helped us note the presence of a toxin gene within a region of probable phage origin, raising the hypothesis that this gene may play a role in this strain's virulence.
publishDate 2016
dc.date.none.fl_str_mv 2016
2016
2016
2016
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://hdl.handle.net/2445/98905
url https://hdl.handle.net/2445/98905
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Reproducció del document publicat a: http://dx.doi.org/10.1186/s40793-016-0131-4
Standards in Genomic Sciences, 2016, vol. 11, num. 7, p. 1-8
http://dx.doi.org/10.1186/s40793-016-0131-4
dc.rights.none.fl_str_mv cc-by (c) Guarischi-Sousa, R. et al., 2016
http://creativecommons.org/licenses/by/3.0/es
info:eu-repo/semantics/openAccess
rights_invalid_str_mv cc-by (c) Guarischi-Sousa, R. et al., 2016
http://creativecommons.org/licenses/by/3.0/es
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 8 p.
application/pdf
dc.publisher.none.fl_str_mv BioMed Central
publisher.none.fl_str_mv BioMed Central
dc.source.none.fl_str_mv Articles publicats en revistes (Genètica, Microbiologia i Estadística)
reponame:Recercat. Dipósit de la Recerca de Catalunya
instname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)
instname_str Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)
reponame_str Recercat. Dipósit de la Recerca de Catalunya
collection Recercat. Dipósit de la Recerca de Catalunya
repository.name.fl_str_mv
repository.mail.fl_str_mv
_version_ 1869412839880392704
score 15,81155

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