Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]

This dataset contains metagenome-assembled genomes (MAGs) reconstructed from four environmental metagenomes collected from the Southern California Bight. A co-assembly was generated using MEGAHIT, and genome binning was performed using a combination of MetaBAT2, CONCOCT, and SemiBin2, followed by re...

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Detalles Bibliográficos
Autores: Cuevas-Cruz, Miguel, Gómez-Consarnau, Laura, Hassanzadeh, Babak, Villarreal, Estefany, Logares, Ramiro, Arístegui, Javier, Latorre, Fran, Lago-Lestón, Asunción, Steindler, Laura, Sañudo-Wilhelmy, Sergio A.
Tipo de recurso: conjunto de datos
Estado:Versión publicada
Fecha de publicación:2026
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/419086
Acceso en línea:http://hdl.handle.net/10261/419086
Access Level:acceso abierto
Palabra clave:MAGS
Metagenomics
Marine microbiology
Microbial rhodopsin
Southern California Bight
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
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oai_identifier_str oai:digital.csic.es:10261/419086
network_acronym_str ES
network_name_str España
repository_id_str
spelling Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]Cuevas-Cruz, MiguelGómez-Consarnau, LauraHassanzadeh, BabakVillarreal, EstefanyLogares, RamiroArístegui, JavierLatorre, FranLago-Lestón, AsunciónSteindler, LauraSañudo-Wilhelmy, Sergio A.MAGSMetagenomicsMarine microbiologyMicrobial rhodopsinSouthern California Bighthttp://metadata.un.org/sdg/14Conserve and sustainably use the oceans, seas and marine resources for sustainable developmentThis dataset contains metagenome-assembled genomes (MAGs) reconstructed from four environmental metagenomes collected from the Southern California Bight. A co-assembly was generated using MEGAHIT, and genome binning was performed using a combination of MetaBAT2, CONCOCT, and SemiBin2, followed by refinement and dereplication with MetaWRAP and dRep, respectively. All MAGs were annotated using Prokka. Two filtering strategies were applied to select high- and medium-quality MAGs: Initial filter: Completeness ≥50%, contamination ≤10%, resulting in 174 MAGs. Stricter filter: Completeness ≥70%, contamination ≤5%, and N50 ≥10,000 bp, resulting in 74 high-quality MAGs. This archive includes the annotated Prokka output directories for all 174 MAGs, each labeled with the prefix SPOT_MAG_XXX.prokka These annotated MAGs can be used for downstream functional or phylogenetic analyses in marine microbiome researchThis project was funded by the United States National Science Foundation grant (NSF, OCE1924464 to L.G.-C) and the United States-Israel Binational Science Foundation (BSF, No. 2019612 to LSThis work contributes to the Institut de Ciències del Mar "Severo Ochoa Centre of Excellence" accreditation CEX2024-001494-S funded by AEI 10.13039/501100011033 of the Spanish Ministry of Science and InnovationPeer reviewedFigshareAgencia Estatal de Investigación (España)National Science Foundation (US)United States-Israel Binational Science FoundationConsejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202620262026info:eu-repo/semantics/datasethttp://purl.org/coar/resource_type/c_ddb1Publisher's versioninfo:eu-repo/semantics/publishedVersionhttp://hdl.handle.net/10261/419086reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)InglésGómez-Consarnau, Laura; Hassanzadeh, Babak; Villarreal, Estefany; Cuevas-Cruz, Miguel; Arístegui, Javier; Logares, Ramiro; Latorre, Fran; Lago-Lestón, Asunción; Steindler, Laura; Sañudo-Wilhelmy, Sergio A.. Unexpected microbial rhodopsin dynamics in sync with phytoplankton blooms. Nature Communications 17: 790 (2026). https://doi.org/10.1038/s41467-025-67474-1. http://hdl.handle.net/10261/419071https://doi.org/10.6084/m9.figshare.29856866Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/4190862026-05-22T06:33:51Z
dc.title.none.fl_str_mv Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]
title Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]
spellingShingle Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]
Cuevas-Cruz, Miguel
MAGS
Metagenomics
Marine microbiology
Microbial rhodopsin
Southern California Bight
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
title_short Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]
title_full Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]
title_fullStr Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]
title_full_unstemmed Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]
title_sort Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]
dc.creator.none.fl_str_mv Cuevas-Cruz, Miguel
Gómez-Consarnau, Laura
Hassanzadeh, Babak
Villarreal, Estefany
Logares, Ramiro
Arístegui, Javier
Latorre, Fran
Lago-Lestón, Asunción
Steindler, Laura
Sañudo-Wilhelmy, Sergio A.
author Cuevas-Cruz, Miguel
author_facet Cuevas-Cruz, Miguel
Gómez-Consarnau, Laura
Hassanzadeh, Babak
Villarreal, Estefany
Logares, Ramiro
Arístegui, Javier
Latorre, Fran
Lago-Lestón, Asunción
Steindler, Laura
Sañudo-Wilhelmy, Sergio A.
author_role author
author2 Gómez-Consarnau, Laura
Hassanzadeh, Babak
Villarreal, Estefany
Logares, Ramiro
Arístegui, Javier
Latorre, Fran
Lago-Lestón, Asunción
Steindler, Laura
Sañudo-Wilhelmy, Sergio A.
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Agencia Estatal de Investigación (España)
National Science Foundation (US)
United States-Israel Binational Science Foundation
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv MAGS
Metagenomics
Marine microbiology
Microbial rhodopsin
Southern California Bight
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
topic MAGS
Metagenomics
Marine microbiology
Microbial rhodopsin
Southern California Bight
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
description This dataset contains metagenome-assembled genomes (MAGs) reconstructed from four environmental metagenomes collected from the Southern California Bight. A co-assembly was generated using MEGAHIT, and genome binning was performed using a combination of MetaBAT2, CONCOCT, and SemiBin2, followed by refinement and dereplication with MetaWRAP and dRep, respectively. All MAGs were annotated using Prokka. Two filtering strategies were applied to select high- and medium-quality MAGs: Initial filter: Completeness ≥50%, contamination ≤10%, resulting in 174 MAGs. Stricter filter: Completeness ≥70%, contamination ≤5%, and N50 ≥10,000 bp, resulting in 74 high-quality MAGs. This archive includes the annotated Prokka output directories for all 174 MAGs, each labeled with the prefix SPOT_MAG_XXX.prokka These annotated MAGs can be used for downstream functional or phylogenetic analyses in marine microbiome research
publishDate 2026
dc.date.none.fl_str_mv 2026
2026
2026
dc.type.none.fl_str_mv info:eu-repo/semantics/dataset
http://purl.org/coar/resource_type/c_ddb1
Publisher's version
info:eu-repo/semantics/publishedVersion
format dataset
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/419086
url http://hdl.handle.net/10261/419086
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Gómez-Consarnau, Laura; Hassanzadeh, Babak; Villarreal, Estefany; Cuevas-Cruz, Miguel; Arístegui, Javier; Logares, Ramiro; Latorre, Fran; Lago-Lestón, Asunción; Steindler, Laura; Sañudo-Wilhelmy, Sergio A.. Unexpected microbial rhodopsin dynamics in sync with phytoplankton blooms. Nature Communications 17: 790 (2026). https://doi.org/10.1038/s41467-025-67474-1. http://hdl.handle.net/10261/419071
https://doi.org/10.6084/m9.figshare.29856866
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Figshare
publisher.none.fl_str_mv Figshare
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
_version_ 1869411721692577792
score 15,811543

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