Annotated Metagenome-Assembled Genomes (MAGs) from the Southern California Bight (V.2) [Dataset]
This dataset contains metagenome-assembled genomes (MAGs) reconstructed from four environmental metagenomes collected from the Southern California Bight. A co-assembly was generated using MEGAHIT, and genome binning was performed using a combination of MetaBAT2, CONCOCT, and SemiBin2, followed by re...
| Autores: | , , , , , , , , , |
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| Tipo de recurso: | conjunto de datos |
| Estado: | Versión publicada |
| Fecha de publicación: | 2026 |
| País: | España |
| Institución: | Consejo Superior de Investigaciones Científicas (CSIC) |
| Repositorio: | DIGITAL.CSIC. Repositorio Institucional del CSIC |
| OAI Identifier: | oai:digital.csic.es:10261/419086 |
| Acceso en línea: | http://hdl.handle.net/10261/419086 |
| Access Level: | acceso abierto |
| Palabra clave: | MAGS Metagenomics Marine microbiology Microbial rhodopsin Southern California Bight http://metadata.un.org/sdg/14 Conserve and sustainably use the oceans, seas and marine resources for sustainable development |
| Sumario: | This dataset contains metagenome-assembled genomes (MAGs) reconstructed from four environmental metagenomes collected from the Southern California Bight. A co-assembly was generated using MEGAHIT, and genome binning was performed using a combination of MetaBAT2, CONCOCT, and SemiBin2, followed by refinement and dereplication with MetaWRAP and dRep, respectively. All MAGs were annotated using Prokka. Two filtering strategies were applied to select high- and medium-quality MAGs: Initial filter: Completeness ≥50%, contamination ≤10%, resulting in 174 MAGs. Stricter filter: Completeness ≥70%, contamination ≤5%, and N50 ≥10,000 bp, resulting in 74 high-quality MAGs. This archive includes the annotated Prokka output directories for all 174 MAGs, each labeled with the prefix SPOT_MAG_XXX.prokka These annotated MAGs can be used for downstream functional or phylogenetic analyses in marine microbiome research |
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