Integrating target capture with whole genome sequencing of recent and natural history collections to explain the phylogeography of wild-growing and cultivated cannabis

The raw Hyb-Seq data are available on NCBI Sequence Read Archive (SRA) under BioProject PRJNA1162815. The additional publicly available sequences used in the study are listed in Table S1. The intermediate files (trimmed alignments, gene and species trees, filtered VCF file and structure outputs) and...

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Bibliographic Details
Authors: Balant, Manica, Vitales, Daniel, Wang, Zhiqiang, Barina, Zoltán, Fu, Lin, Gao, Tiangang, Garnatje, Teresa, Gras, Airy, Hayat, Muhammad Qasim, Oganesian, Marine, Pellicer, Jaume, Salami, Seyed A., Seregin, Alexey P., Stepanyan-Gandilyan, Nina, Sultana, Nusrat, Tsooj, Shagdar, Urgamal, Magsar, Vallès, Joan, van Velzen, Robin, Pokorny, Lisa
Format: article
Status:Published version
Publication Date:2025
Country:España
Institution:Consejo Superior de Investigaciones Científicas (CSIC)
Repository:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/395253
Online Access:http://hdl.handle.net/10261/395253
https://api.elsevier.com/content/abstract/scopus_id/105007109520
Access Level:Open access
Keyword:Angiosperms353
Cannabaceae
Hemp
Herbariomics
Hyb-Seq
Phylogenomics
Population genomics
Single nucleotide polymorphisms
Description
Summary:The raw Hyb-Seq data are available on NCBI Sequence Read Archive (SRA) under BioProject PRJNA1162815. The additional publicly available sequences used in the study are listed in Table S1. The intermediate files (trimmed alignments, gene and species trees, filtered VCF file and structure outputs) and workflow are available from Zenodo (10.5281/zenodo.14567235).

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