The self-similarity properties and multifractal analysis of DNA sequences
In this work is presented a pedagogical point of view of multifractal analysis deoxyribonucleic acid (DNA) sequences is presented. The DNA sequences are formed by 4 nucleotides (adenine, cytosine, guanine, and tymine). Following Jeffrey’s paper we associated a simple contractive function to each nuc...
| Authors: | , , |
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| Format: | article |
| Status: | Published version |
| Publication Date: | 2019 |
| Country: | España |
| Institution: | Universidad Pública de Navarra |
| Repository: | Academica-e. Repositorio Institucional de la Universidad Pública de Navarra |
| OAI Identifier: | oai:academica-e.unavarra.es:2454/40761 |
| Online Access: | https://hdl.handle.net/2454/40761 |
| Access Level: | Open access |
| Keyword: | Multifractals DNA sequences self-affine Hutchinson operator Holder exponents |
| Summary: | In this work is presented a pedagogical point of view of multifractal analysis deoxyribonucleic acid (DNA) sequences is presented. The DNA sequences are formed by 4 nucleotides (adenine, cytosine, guanine, and tymine). Following Jeffrey’s paper we associated a simple contractive function to each nucleotide, and constructed the Hutchinson’s operator W, which was used to build covers of different sizes of the unitary square Q, thus Wk (Q) is a cover of Q, conformed by 4k squares Qk of size 2−k, as each Qk corresponds to a unique subsequence of nucleotides with length k: b1b2...bk. Besides, it isobtained the optimal cover Ck to the fractal F generated for each DNA sequence was obtained. We made a multifractal decomposition of Ck in terms of the sets Jα conformed by the Qk’s with the same value of the Holder exponent α, and determined f(α), the Hausdorff dimension of Jα, using the curdling theorem. |
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