Disentangling the mechanisms shaping the surface ocean microbiota

17 pages, 4 figures, supplementary information https://doi.org/10.1186/s40168-020-00827-8.-- DNA sequences and metadata from the Malaspina expedition are publicly available at the European Nucleotide Archive (http://www.ebi.ac.uk/ena; accession numbers PRJEB23913 [18S rRNA genes] & PRJEB25224 [1...

Full description

Bibliographic Details
Authors: Logares, Ramiro, Deutschmann, Ina, Junger, Pedro C., Giner, Caterina R., Krabberød, Anders K., Schmidt, Thomas S.B., Rubinat-Ripoll, Laura, Mestre, Mireia, Salazar, Guillem, Ruiz-González, Clara, Sebastián, Marta, Vargas, Colomban de, Acinas, Silvia G., Duarte, Carlos M., Gasol, Josep M., Massana, Ramon
Format: article
Publication Date:2020
Country:España
Institution:Consejo Superior de Investigaciones Científicas (CSIC)
Repository:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/209070
Online Access:https://doi.org/10.1186/s40168-020-00827-8
http://hdl.handle.net/10261/209070
Access Level:Open access
Keyword:Ocean
Plankton
Microbiota
Picoeukaryotes
Prokaryotes
Community structure
Ecological processes
Selection
Dispersal
Drift
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
Description
Summary:17 pages, 4 figures, supplementary information https://doi.org/10.1186/s40168-020-00827-8.-- DNA sequences and metadata from the Malaspina expedition are publicly available at the European Nucleotide Archive (http://www.ebi.ac.uk/ena; accession numbers PRJEB23913 [18S rRNA genes] & PRJEB25224 [16S rRNA genes]). The data used from TARA Oceans is publicly available through Pangaea (https://doi.org/10.1594/PANGAEA.873275) as well as in (http://ocean-microbiome.embl.de/companion.html) [34, 56]. The code for generating OTU-99% tables is available in: https://doi.org/10.5281/zenodo.259579. R-Scripts for calculating the β-Nearest Taxon Index and the Raup-Crick metric are available in https://github.com/stegen/Stegen_etal_ISME_2013. The code for calculating the TINA and PINA indices is available in https://github.com/defleury/Schmidt_et_al_2016_community_similarity, while the code for calculating MIC is available at http://www.exploredata.net. All used R packages as well as other software are cited in ‘Methods’ section

Similar Items