Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]

D’haene, Eva; López Soriano, Víctor; Martínez-García, Pedro Manuel; Kalayanamontri, Soraya; Dueñas Rey, Alfredo; Sousa Ortega, Ana; Naranjo, Silvia; Sompele, Stijn Van de; Vantomme, Lies; Mahieu, Quinten; Vergult, Sarah; Neto, Ana; Gómez-Skarmeta, José Luis; Martínez-Morales, Juan Ramón; Bauwens, Miriam; Tena, Juan J.; Baere, Elfride De

Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]

Additional file 3. BED file with Hi-C boundaries in RPE/choroid (25 kb resolution).

Detalles Bibliográficos
Autores:	D’haene, Eva, López Soriano, Víctor, Martínez-García, Pedro Manuel, Kalayanamontri, Soraya, Dueñas Rey, Alfredo, Sousa Ortega, Ana, Naranjo, Silvia, Sompele, Stijn Van de, Vantomme, Lies, Mahieu, Quinten, Vergult, Sarah, Neto, Ana, Gómez-Skarmeta, José Luis, Martínez-Morales, Juan Ramón, Bauwens, Miriam, Tena, Juan J., Baere, Elfride De
Tipo de recurso:	conjunto de datos
Estado:	Versión publicada
Fecha de publicación:	2024
País:	España
Institución:	Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:	DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:	oai:digital.csic.es:10261/367596
Acceso en línea:	http://hdl.handle.net/10261/367596 https://doi.org/10.20350/digitalCSIC/16542
Access Level:	acceso abierto
Palabra clave:	3D genome structure Hi-C HiChIP UMI-4C Neural retina Retinal pigment epithelium (RPE) Inherited retinal disease (IRD) ABCA4 Cis-regulatory element (CRE) Enhancer assay

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oai_identifier_str	oai:digital.csic.es:10261/367596
network_acronym_str	ES
network_name_str	España
repository_id_str
spelling	Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]D’haene, EvaLópez Soriano, VíctorMartínez-García, Pedro ManuelKalayanamontri, SorayaDueñas Rey, AlfredoSousa Ortega, AnaNaranjo, SilviaSompele, Stijn Van deVantomme, LiesMahieu, QuintenVergult, SarahNeto, AnaGómez-Skarmeta, José LuisMartínez-Morales, Juan RamónBauwens, MiriamTena, Juan J.Baere, Elfride De3D genome structureHi-CHiChIPUMI-4CNeural retinaRetinal pigment epithelium (RPE)Inherited retinal disease (IRD)ABCA4Cis-regulatory element (CRE)Enhancer assayAdditional file 3. BED file with Hi-C boundaries in RPE/choroid (25 kb resolution).Ghent University European Commission Research Foundation - Flanders Junta de AndalucíaPeer reviewedFigshareGhent UniversityEuropean CommissionResearch Foundation - FlandersJunta de AndalucíaConsejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202420242024info:eu-repo/semantics/datasethttp://purl.org/coar/resource_type/c_ddb1Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/vnd.realvnc.bedhttp://hdl.handle.net/10261/367596https://doi.org/10.20350/digitalCSIC/16542reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)InglésD’haene, Eva; López Soriano, Víctor; Martínez-García, Pedro Manuel; Kalayanamontri, Soraya; Dueñas Rey, Alfredo; Sousa Ortega, Ana; Naranjo, Silvia; Sompele, Stijn Van de; Vantomme, Lies; Mahieu, Quinten; Vergult, Sarah; Neto, Ana; Gómez-Skarmeta, José Luis; Martínez-Morales, Juan Ramón; Bauwens, Miriam; Tena, Juan J.; Baere, Elfride De. Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci. https://doi.org/10.1186/s13059-024-03250-6 . http://hdl.handle.net/10261/367547https://doi.org/10.6084/m9.figshare.26721993.v1Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3675962026-05-22T06:33:51Z
dc.title.none.fl_str_mv	Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]
title	Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]
spellingShingle	Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset] D’haene, Eva 3D genome structure Hi-C HiChIP UMI-4C Neural retina Retinal pigment epithelium (RPE) Inherited retinal disease (IRD) ABCA4 Cis-regulatory element (CRE) Enhancer assay
title_short	Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]
title_full	Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]
title_fullStr	Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]
title_full_unstemmed	Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]
title_sort	Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]
dc.creator.none.fl_str_mv	D’haene, Eva López Soriano, Víctor Martínez-García, Pedro Manuel Kalayanamontri, Soraya Dueñas Rey, Alfredo Sousa Ortega, Ana Naranjo, Silvia Sompele, Stijn Van de Vantomme, Lies Mahieu, Quinten Vergult, Sarah Neto, Ana Gómez-Skarmeta, José Luis Martínez-Morales, Juan Ramón Bauwens, Miriam Tena, Juan J. Baere, Elfride De
author	D’haene, Eva
author_facet	D’haene, Eva López Soriano, Víctor Martínez-García, Pedro Manuel Kalayanamontri, Soraya Dueñas Rey, Alfredo Sousa Ortega, Ana Naranjo, Silvia Sompele, Stijn Van de Vantomme, Lies Mahieu, Quinten Vergult, Sarah Neto, Ana Gómez-Skarmeta, José Luis Martínez-Morales, Juan Ramón Bauwens, Miriam Tena, Juan J. Baere, Elfride De
author_role	author
author2	López Soriano, Víctor Martínez-García, Pedro Manuel Kalayanamontri, Soraya Dueñas Rey, Alfredo Sousa Ortega, Ana Naranjo, Silvia Sompele, Stijn Van de Vantomme, Lies Mahieu, Quinten Vergult, Sarah Neto, Ana Gómez-Skarmeta, José Luis Martínez-Morales, Juan Ramón Bauwens, Miriam Tena, Juan J. Baere, Elfride De
author2_role	author author author author author author author author author author author author author author author author
dc.contributor.none.fl_str_mv	Ghent University European Commission Research Foundation - Flanders Junta de Andalucía Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv	3D genome structure Hi-C HiChIP UMI-4C Neural retina Retinal pigment epithelium (RPE) Inherited retinal disease (IRD) ABCA4 Cis-regulatory element (CRE) Enhancer assay
topic	3D genome structure Hi-C HiChIP UMI-4C Neural retina Retinal pigment epithelium (RPE) Inherited retinal disease (IRD) ABCA4 Cis-regulatory element (CRE) Enhancer assay
description	Additional file 3. BED file with Hi-C boundaries in RPE/choroid (25 kb resolution).
publishDate	2024
dc.date.none.fl_str_mv	2024 2024 2024
dc.type.none.fl_str_mv	info:eu-repo/semantics/dataset http://purl.org/coar/resource_type/c_ddb1 Publisher's version info:eu-repo/semantics/publishedVersion
format	dataset
status_str	publishedVersion
dc.identifier.none.fl_str_mv	http://hdl.handle.net/10261/367596 https://doi.org/10.20350/digitalCSIC/16542
url	http://hdl.handle.net/10261/367596 https://doi.org/10.20350/digitalCSIC/16542
dc.language.none.fl_str_mv	Inglés
language_invalid_str_mv	Inglés
dc.relation.none.fl_str_mv	D’haene, Eva; López Soriano, Víctor; Martínez-García, Pedro Manuel; Kalayanamontri, Soraya; Dueñas Rey, Alfredo; Sousa Ortega, Ana; Naranjo, Silvia; Sompele, Stijn Van de; Vantomme, Lies; Mahieu, Quinten; Vergult, Sarah; Neto, Ana; Gómez-Skarmeta, José Luis; Martínez-Morales, Juan Ramón; Bauwens, Miriam; Tena, Juan J.; Baere, Elfride De. Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci. https://doi.org/10.1186/s13059-024-03250-6 . http://hdl.handle.net/10261/367547 https://doi.org/10.6084/m9.figshare.26721993.v1 Sí
dc.rights.none.fl_str_mv	info:eu-repo/semantics/openAccess
eu_rights_str_mv	openAccess
dc.format.none.fl_str_mv	application/vnd.realvnc.bed
dc.publisher.none.fl_str_mv	Figshare
publisher.none.fl_str_mv	Figshare
dc.source.none.fl_str_mv	reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str	Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str	DIGITAL.CSIC. Repositorio Institucional del CSIC
collection	DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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Additional file 3 of Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci [Dataset]

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