Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.

Abstract: Background: Modern crop varieties are typically cultivated in agriculturally well-managed soils far from the centers oforigin of their wild relatives. How this habitat expansion impacted plant microbiome assembly is not well understood. Results: Here, we investigated if the transition from...

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Autores: PEREZ-JARAMILLO, J. E., HOLLANDER, M. de, RAMÍREZ, C. A., MENDES, R., RAAIJMAKERS, J. M., CARRIÓN, V. J.
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2019
País:Brasil
Institución:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
Repositorio:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Idioma:inglés
OAI Identifier:oai:www.alice.cnptia.embrapa.br:doc/1115028
Acceso en línea:http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115028
https://doi.org/10.1186/s40168-019-0727-1
Access Level:acceso abierto
Palabra clave:Common bean
Wild and modern accessions
Core microbiome
Networks
Feijão
Rizosfera
Phaseolus
Microbiome
domestication
rhizosphere
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oai_identifier_str oai:www.alice.cnptia.embrapa.br:doc/1115028
network_acronym_str BR
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spelling Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.Common beanWild and modern accessionsCore microbiomeNetworksFeijãoRizosferaPhaseolusMicrobiomedomesticationrhizosphereAbstract: Background: Modern crop varieties are typically cultivated in agriculturally well-managed soils far from the centers oforigin of their wild relatives. How this habitat expansion impacted plant microbiome assembly is not well understood. Results: Here, we investigated if the transition from a native to an agricultural soil affected rhizobacterial communityassembly of wild and modern common bean (Phaseolus vulgaris) and if this led to a depletion of rhizobacterialdiversity. The impact of the bean genotype on rhizobacterial assembly was more prominent in the agriculturalsoil than in the native soil. Although only 113 operational taxonomic units (OTUs) out of a total of 15,925 wereshared by all eight bean accessions grown in native and agricultural soils, this core microbiome represented a largefraction (25.9%) of all sequence reads. More OTUs were exclusively found in the rhizosphere of common bean in theagricultural soil as compared to the native soil and in the rhizosphere of modern bean accessions as compared to wildaccessions. Co-occurrence analyses further showed a reduction in complexity of the interactions in the beanrhizosphere microbiome in the agricultural soil as compared to the native soil.JUAN ESTEBAN PEREZ-JARAMILLO, Netherlands Institute of Ecology; MATTIAS DE HOLLANDER, Netherlands Institute of Ecology; CAMILO ANDRES RAMIREZ, University of Antioquia; RODRIGO MENDES, CNPMA; JOS M RAAIJMAKERS, Netherlands Institute of Ecology; VICTOR J CARRION, Leiden University.2019-11-25T18:19:47Z2019-11-25T18:19:47Z2019-11-2520192019-11-25T18:19:47Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleMicrobiome, v. 7, 2019. Article 114.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115028https://doi.org/10.1186/s40168-019-0727-1enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPAPEREZ-JARAMILLO, J. E.HOLLANDER, M. deRAMÍREZ, C. A.MENDES, R.RAAIJMAKERS, J. M.CARRIÓN, V. J.2019-11-25T18:19:53Zoai:www.alice.cnptia.embrapa.br:doc/1115028Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-11-25T18:19:53Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.
title Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.
spellingShingle Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.
PEREZ-JARAMILLO, J. E.
Common bean
Wild and modern accessions
Core microbiome
Networks
Feijão
Rizosfera
Phaseolus
Microbiome
domestication
rhizosphere
title_short Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.
title_full Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.
title_fullStr Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.
title_full_unstemmed Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.
title_sort Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.
dc.creator.none.fl_str_mv PEREZ-JARAMILLO, J. E.
HOLLANDER, M. de
RAMÍREZ, C. A.
MENDES, R.
RAAIJMAKERS, J. M.
CARRIÓN, V. J.
author PEREZ-JARAMILLO, J. E.
author_facet PEREZ-JARAMILLO, J. E.
HOLLANDER, M. de
RAMÍREZ, C. A.
MENDES, R.
RAAIJMAKERS, J. M.
CARRIÓN, V. J.
author_role author
author2 HOLLANDER, M. de
RAMÍREZ, C. A.
MENDES, R.
RAAIJMAKERS, J. M.
CARRIÓN, V. J.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv JUAN ESTEBAN PEREZ-JARAMILLO, Netherlands Institute of Ecology; MATTIAS DE HOLLANDER, Netherlands Institute of Ecology; CAMILO ANDRES RAMIREZ, University of Antioquia; RODRIGO MENDES, CNPMA; JOS M RAAIJMAKERS, Netherlands Institute of Ecology; VICTOR J CARRION, Leiden University.
dc.subject.por.fl_str_mv Common bean
Wild and modern accessions
Core microbiome
Networks
Feijão
Rizosfera
Phaseolus
Microbiome
domestication
rhizosphere
topic Common bean
Wild and modern accessions
Core microbiome
Networks
Feijão
Rizosfera
Phaseolus
Microbiome
domestication
rhizosphere
description Abstract: Background: Modern crop varieties are typically cultivated in agriculturally well-managed soils far from the centers oforigin of their wild relatives. How this habitat expansion impacted plant microbiome assembly is not well understood. Results: Here, we investigated if the transition from a native to an agricultural soil affected rhizobacterial communityassembly of wild and modern common bean (Phaseolus vulgaris) and if this led to a depletion of rhizobacterialdiversity. The impact of the bean genotype on rhizobacterial assembly was more prominent in the agriculturalsoil than in the native soil. Although only 113 operational taxonomic units (OTUs) out of a total of 15,925 wereshared by all eight bean accessions grown in native and agricultural soils, this core microbiome represented a largefraction (25.9%) of all sequence reads. More OTUs were exclusively found in the rhizosphere of common bean in theagricultural soil as compared to the native soil and in the rhizosphere of modern bean accessions as compared to wildaccessions. Co-occurrence analyses further showed a reduction in complexity of the interactions in the beanrhizosphere microbiome in the agricultural soil as compared to the native soil.
publishDate 2019
dc.date.none.fl_str_mv 2019-11-25T18:19:47Z
2019-11-25T18:19:47Z
2019-11-25
2019
2019-11-25T18:19:47Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Microbiome, v. 7, 2019. Article 114.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115028
https://doi.org/10.1186/s40168-019-0727-1
identifier_str_mv Microbiome, v. 7, 2019. Article 114.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115028
https://doi.org/10.1186/s40168-019-0727-1
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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score 15,301603

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