SCORCH: Improving structure-based virtual screening with machine learning classifiers, data augmentation, and uncertainty estimation

[Introduction] The discovery of a new drug is a costly and lengthy endeavour. The computational prediction of which small molecules can bind to a protein target can accelerate this process if the predictions are fast and accurate enough. Recent machine-learning scoring functions re-evaluate the outp...

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Detalles Bibliográficos
Autores: McGibbon, Miles, Money-Kyrle, Sam, Blay, Vincent, Houston, Douglas R.
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2023
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/353327
Acceso en línea:http://hdl.handle.net/10261/353327
Access Level:acceso abierto
Palabra clave:Docking
Neural networks
Scoring
Drug discovery
Machine learning
Virtual screening
Descripción
Sumario:[Introduction] The discovery of a new drug is a costly and lengthy endeavour. The computational prediction of which small molecules can bind to a protein target can accelerate this process if the predictions are fast and accurate enough. Recent machine-learning scoring functions re-evaluate the output of molecular docking to achieve more accurate predictions. However, previous scoring functions were trained on crystalised protein-ligand complexes and datasets of decoys. The limited availability of crystal structures and biases in the decoy datasets can lower the performance of scoring functions.