Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

18 pages, 4 figures, supplemental information https://doi.org/10.1016/j.xgen.2022.100123.-- Data and code availability: • All data our study generated are publicly available at http://www.genoscope.cns.fr/tara/. The link provides access to the 11 raw metagenomic co-assemblies, the FASTA files for 71...

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Detalles Bibliográficos
Autores: Delmont, Tom O., Gaia, Morgan, Hinsinger, Damien D., Frémont, Paul, Vanni, Chiara, Fernández-Guerra, Antonio, Eren, A. Murat, Kourlaiev, Artem, D'Agata, Leo, Clayssen, Quentin, Villar, Emilie, Labadie, Karine, Cruaud, Corinne, Poulain, Julie, Da Silva, Corinne, Wessner, Marc, Noel, Benjamin, Aury, Jean‐Marc, Tara Oceans Coordinators, Acinas, Silvia G.
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2022
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/304603
Acceso en línea:http://hdl.handle.net/10261/304603
Access Level:acceso abierto
Palabra clave:Planktonic eukaryotes
Genomics metagenomics
Tara Oceans
Anvi’o
Evolution
Functions
Ecology
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
Descripción
Sumario:18 pages, 4 figures, supplemental information https://doi.org/10.1016/j.xgen.2022.100123.-- Data and code availability: • All data our study generated are publicly available at http://www.genoscope.cns.fr/tara/. The link provides access to the 11 raw metagenomic co-assemblies, the FASTA files for 713 MAGs and SAGs, the ∼10 million protein-coding sequences (nucleotides, amino acids and gff format), and the curated DNA-dependent RNA polymerase genes (MAGs and SAGs and METdb transcriptomes). This link also provides access to the supplemental figures and the Supplemental material. Finally, code development within anvi’o for the BUSCO single copy core genes is available at https://github.com/merenlab/anvio. • Original code has been deposited at Zenodo and is publicly available. The accession number is listed in the key resources table. • Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request

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