Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening

Fleshy fruits using ethylene to regulate ripening have developed multiple times in the history of angiosperms, presenting a clear case of convergent evolution whose molecular basis remains largely unknown. Analysis of the fruitENCODE data consisting of 361 transcriptome, 71 accessible chromatin, 147...

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Detalles Bibliográficos
Autores: Lü, Peitao, Yu, Sheng, Zhu, Ning, Chen, Yun-Ru, Zhou, Biyan, Pan, Yu, Tzeng, David, Fabi, Joao Paulo, Argyris, Jason, Garcia-Mas, Jordi, Ye, Nenghui, Zhang, Jianhua, Grierson, Donald, Xiang, Jenny, Fei, Zhangjun, Giovannoni, James, Zhong, Silin
Tipo de recurso: artículo
Fecha de publicación:2018
País:España
Institución:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)
Repositorio:Recercat. Dipósit de la Recerca de Catalunya
OAI Identifier:oai:recercat.cat:20.500.12327/110
Acceso en línea:http://hdl.handle.net/20.500.12327/110
https://doi.org/10.1038/s41477-018-0249-z
Access Level:acceso abierto
Palabra clave:633
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repository_id_str
spelling Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripeningLü, PeitaoYu, ShengZhu, NingChen, Yun-RuZhou, BiyanPan, YuTzeng, DavidFabi, Joao PauloArgyris, JasonGarcia-Mas, JordiYe, NenghuiZhang, JianhuaGrierson, DonaldXiang, JennyFei, ZhangjunGiovannoni, JamesZhong, Silin633Fleshy fruits using ethylene to regulate ripening have developed multiple times in the history of angiosperms, presenting a clear case of convergent evolution whose molecular basis remains largely unknown. Analysis of the fruitENCODE data consisting of 361 transcriptome, 71 accessible chromatin, 147 histone and 45 DNA methylation profiles reveals three types of transcriptional feedback circuits controlling ethylene-dependent fruit ripening. These circuits are evolved from senescence or floral organ identity pathways in the ancestral angiosperms either by neofunctionalisation or repurposing pre-existing genes. The epigenome, H3K27me3 in particular, has played a conserved role in restricting ripening genes and their orthologues in dry and ethylene-independent fleshy fruits. Our findings suggest that evolution of ripening is constrained by limited hormone molecules and genetic and epigenetic materials, and whole-genome duplications have provided opportunities for plants to successfully circumvent these limitations.info:eu-repo/semantics/acceptedVersionNature ResearchProducció VegetalGenòmica i Biotecnologia2018info:eu-repo/semantics/article24http://hdl.handle.net/20.500.12327/110https://doi.org/10.1038/s41477-018-0249-zreponame:Recercat. Dipósit de la Recerca de Catalunyainstname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)InglésNature PlantsMINECO/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2015-64625-C2-1-R/ES/DISECCION GENETICA DE DOS CARACTERES DE INTERES AGRONOMICO EN MELON: RESISTENCIA A CUCUMBER MOSAIC VIRUS Y MADURACION CLIMATERICA DE FRUTO/RESMELORIPAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessoai:recercat.cat:20.500.12327/1102026-05-29T05:05:01Z
dc.title.none.fl_str_mv Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
title Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
spellingShingle Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
Lü, Peitao
633
title_short Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
title_full Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
title_fullStr Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
title_full_unstemmed Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
title_sort Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
dc.creator.none.fl_str_mv Lü, Peitao
Yu, Sheng
Zhu, Ning
Chen, Yun-Ru
Zhou, Biyan
Pan, Yu
Tzeng, David
Fabi, Joao Paulo
Argyris, Jason
Garcia-Mas, Jordi
Ye, Nenghui
Zhang, Jianhua
Grierson, Donald
Xiang, Jenny
Fei, Zhangjun
Giovannoni, James
Zhong, Silin
author Lü, Peitao
author_facet Lü, Peitao
Yu, Sheng
Zhu, Ning
Chen, Yun-Ru
Zhou, Biyan
Pan, Yu
Tzeng, David
Fabi, Joao Paulo
Argyris, Jason
Garcia-Mas, Jordi
Ye, Nenghui
Zhang, Jianhua
Grierson, Donald
Xiang, Jenny
Fei, Zhangjun
Giovannoni, James
Zhong, Silin
author_role author
author2 Yu, Sheng
Zhu, Ning
Chen, Yun-Ru
Zhou, Biyan
Pan, Yu
Tzeng, David
Fabi, Joao Paulo
Argyris, Jason
Garcia-Mas, Jordi
Ye, Nenghui
Zhang, Jianhua
Grierson, Donald
Xiang, Jenny
Fei, Zhangjun
Giovannoni, James
Zhong, Silin
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Producció Vegetal
Genòmica i Biotecnologia
dc.subject.none.fl_str_mv 633
topic 633
description Fleshy fruits using ethylene to regulate ripening have developed multiple times in the history of angiosperms, presenting a clear case of convergent evolution whose molecular basis remains largely unknown. Analysis of the fruitENCODE data consisting of 361 transcriptome, 71 accessible chromatin, 147 histone and 45 DNA methylation profiles reveals three types of transcriptional feedback circuits controlling ethylene-dependent fruit ripening. These circuits are evolved from senescence or floral organ identity pathways in the ancestral angiosperms either by neofunctionalisation or repurposing pre-existing genes. The epigenome, H3K27me3 in particular, has played a conserved role in restricting ripening genes and their orthologues in dry and ethylene-independent fleshy fruits. Our findings suggest that evolution of ripening is constrained by limited hormone molecules and genetic and epigenetic materials, and whole-genome duplications have provided opportunities for plants to successfully circumvent these limitations.
publishDate 2018
dc.date.none.fl_str_mv 2018
dc.type.none.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12327/110
https://doi.org/10.1038/s41477-018-0249-z
url http://hdl.handle.net/20.500.12327/110
https://doi.org/10.1038/s41477-018-0249-z
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Nature Plants
MINECO/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2015-64625-C2-1-R/ES/DISECCION GENETICA DE DOS CARACTERES DE INTERES AGRONOMICO EN MELON: RESISTENCIA A CUCUMBER MOSAIC VIRUS Y MADURACION CLIMATERICA DE FRUTO/RESMELORIP
dc.rights.none.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 24
dc.publisher.none.fl_str_mv Nature Research
publisher.none.fl_str_mv Nature Research
dc.source.none.fl_str_mv reponame:Recercat. Dipósit de la Recerca de Catalunya
instname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)
instname_str Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)
reponame_str Recercat. Dipósit de la Recerca de Catalunya
collection Recercat. Dipósit de la Recerca de Catalunya
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15.812455

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