Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

This article is contribution 125 of Tara Oceans.-- 13 pages, 5 figures, supplementary materials https://doi.org/10.1126/sciadv.abj9309.-- Data and materials availability: The raw sediment sequencing data have been deposited to the ENA under project accessions PRJEB48517 (deep_sea) and PRJEB33873 (eD...

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Autores: Cordier, Tristan, Barrenechea, Inés, Henry, Nicolas, Lejzerowicz, Franck, Berney, Cédric, Morard, Raphaël, Brandt, Angelika, Cambon-Bonavita, M. A., Guidi, Lionel, Lombard, Fabien, Martínez Arbizu, Pedro, Massana, Ramon, Orejas, Covadonga, Poulain, Julie, Smith, Craig R., Wincker, Patrick, Arnaud-Haond, Sophie, Gooday, Andrew J., Vargas, Colomban de, Pawlowski, Jan
Tipo de recurso: artículo
Fecha de publicación:2022
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/263302
Acceso en línea:http://hdl.handle.net/10261/263302
Access Level:acceso abierto
Palabra clave:ddc:550
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oai_identifier_str oai:digital.csic.es:10261/263302
network_acronym_str ES
network_name_str España
repository_id_str
dc.title.none.fl_str_mv Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
title Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
spellingShingle Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
Cordier, Tristan
ddc:550
title_short Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
title_full Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
title_fullStr Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
title_full_unstemmed Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
title_sort Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
dc.creator.none.fl_str_mv Cordier, Tristan
Barrenechea, Inés
Henry, Nicolas
Lejzerowicz, Franck
Berney, Cédric
Morard, Raphaël
Brandt, Angelika
Cambon-Bonavita, M. A.
Guidi, Lionel
Lombard, Fabien
Martínez Arbizu, Pedro
Massana, Ramon
Orejas, Covadonga
Poulain, Julie
Smith, Craig R.
Wincker, Patrick
Arnaud-Haond, Sophie
Gooday, Andrew J.
Vargas, Colomban de
Pawlowski, Jan
author Cordier, Tristan
author_facet Cordier, Tristan
Barrenechea, Inés
Henry, Nicolas
Lejzerowicz, Franck
Berney, Cédric
Morard, Raphaël
Brandt, Angelika
Cambon-Bonavita, M. A.
Guidi, Lionel
Lombard, Fabien
Martínez Arbizu, Pedro
Massana, Ramon
Orejas, Covadonga
Poulain, Julie
Smith, Craig R.
Wincker, Patrick
Arnaud-Haond, Sophie
Gooday, Andrew J.
Vargas, Colomban de
Pawlowski, Jan
author_role author
author2 Barrenechea, Inés
Henry, Nicolas
Lejzerowicz, Franck
Berney, Cédric
Morard, Raphaël
Brandt, Angelika
Cambon-Bonavita, M. A.
Guidi, Lionel
Lombard, Fabien
Martínez Arbizu, Pedro
Massana, Ramon
Orejas, Covadonga
Poulain, Julie
Smith, Craig R.
Wincker, Patrick
Arnaud-Haond, Sophie
Gooday, Andrew J.
Vargas, Colomban de
Pawlowski, Jan
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Swiss National Science Foundation
Swiss Network for International Studies
European Commission
Sorbonne Université
Agence Nationale de la Recherche (France)
Institut Français de Recherche pour l'Exploitation de la Mer
Federal Ministry of Education and Research (Germany)
Ministerio de Economía y Competitividad (España)
Gordon and Betty Moore Foundation
Seabed Resources Development
Agencia Estatal de Investigación (España)
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv ddc:550
topic ddc:550
description This article is contribution 125 of Tara Oceans.-- 13 pages, 5 figures, supplementary materials https://doi.org/10.1126/sciadv.abj9309.-- Data and materials availability: The raw sediment sequencing data have been deposited to the ENA under project accessions PRJEB48517 (deep_sea) and PRJEB33873 (eDNAbyss). Accession numbers of additional raw sequencing data of pelagic and sediment samples analyzed in this study can be found in respective publications listed in table S2. All the metadata and R code to process the raw sequencing data and to reproduce the results and figures are available through a GitHub repository: https://github.com/trtcrd/DOS_V9
publishDate 2022
dc.date.none.fl_str_mv 2022
2022
2022
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
format article
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/263302
url http://hdl.handle.net/10261/263302
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
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info:eu-repo/grantAgreement/EC/H2020/818449
info:eu-repo/grantAgreement/EC/H2020/678760
info:eu-repo/grantAgreement/MINECO//CTM2016-75083-R
https://doi.org/10.1126/sciadv.abj9309
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv American Association for the Advancement of Science
publisher.none.fl_str_mv American Association for the Advancement of Science
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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spelling Patterns of eukaryotic diversity from the surface to the deep-ocean sedimentCordier, TristanBarrenechea, InésHenry, NicolasLejzerowicz, FranckBerney, CédricMorard, RaphaëlBrandt, AngelikaCambon-Bonavita, M. A.Guidi, LionelLombard, FabienMartínez Arbizu, PedroMassana, RamonOrejas, CovadongaPoulain, JulieSmith, Craig R.Wincker, PatrickArnaud-Haond, SophieGooday, Andrew J.Vargas, Colomban dePawlowski, Janddc:550This article is contribution 125 of Tara Oceans.-- 13 pages, 5 figures, supplementary materials https://doi.org/10.1126/sciadv.abj9309.-- Data and materials availability: The raw sediment sequencing data have been deposited to the ENA under project accessions PRJEB48517 (deep_sea) and PRJEB33873 (eDNAbyss). Accession numbers of additional raw sequencing data of pelagic and sediment samples analyzed in this study can be found in respective publications listed in table S2. All the metadata and R code to process the raw sequencing data and to reproduce the results and figures are available through a GitHub repository: https://github.com/trtcrd/DOS_V9Remote deep-ocean sediment (DOS) ecosystems are among the least explored biomes on Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic organisms from sinking plankton. Here, we compare global-scale eukaryotic DNA metabarcoding datasets (18S-V9) from abyssal and lower bathyal surficial sediments and euphotic and aphotic ocean pelagic layers to distinguish plankton from benthic diversity in sediment material. Based on 1685 samples collected throughout the world ocean, we show that DOS diversity is at least threefold that in pelagic realms, with nearly two-thirds represented by abundant yet unknown eukaryotes. These benthic communities are spatially structured by ocean basins and particulate organic carbon (POC) flux from the upper ocean. Plankton DNA reaching the DOS originates from abundant species, with maximal deposition at high latitudes. Its seafloor DNA signature predicts variations in POC export from the surface and reveals previously overlooked taxa that may drive the biological carbon pumpWe further thank the following sponsors for support: the Swiss National Science Foundation (grants 31003A_159709, 31003A_1791259, and P2GEP3_171829), the Swiss Network for International Studies award (20170024), the European Research Council (grant 818449 AGENSI), CNRS (in particular, FR022), Sorbonne University, the French Government “Investissement d’Avenir” program OCEANOMICS (ANR-11-BTBR-0008), France Génomique, the Genoscope-CEA (ANR-10-INBS-09) for the project eDNAbyss (AP2016-228), Ifremer for the project Merlin “Pourquoi pas les Abysses,” the German Research Foundation (grants BR1121/20-1 and BR1121/41-1 and the Center/Cluster of Excellence “The Ocean Floor—Earth’s Uncharted Interface”), the German Ministry for Science and Education (grants 03G0223A and 03G0227A), EU JPIO-Oceans project MinigImpact-2 (German BMBF contract 03F0812E), Spanish Ministry of Economy and Competitiveness (CTM2016-75083-R), European Union’s Horizon 2020 Research and Innovation Program (grant 678760 ATLAS), and the Gordon and Betty Moore Foundation (grant GBMF5257 UniEuk). Samples from the UK-1 and OMS license areas in the Clarion-Clipperton Zone were collected as part of the ABYSSLINE project, funded by UK Seabed Resources Development Ltd. (contract SRDL SRD100100)With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S)Peer reviewedAmerican Association for the Advancement of ScienceSwiss National Science FoundationSwiss Network for International StudiesEuropean CommissionSorbonne UniversitéAgence Nationale de la Recherche (France)Institut Français de Recherche pour l'Exploitation de la MerFederal Ministry of Education and Research (Germany)Ministerio de Economía y Competitividad (España)Gordon and Betty Moore FoundationSeabed Resources DevelopmentAgencia Estatal de Investigación (España)Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202220222022info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501http://hdl.handle.net/10261/263302reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/EC/H2020/818449info:eu-repo/grantAgreement/EC/H2020/678760info:eu-repo/grantAgreement/MINECO//CTM2016-75083-Rhttps://doi.org/10.1126/sciadv.abj9309Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/2633022026-05-22T06:33:51Z
score 15,812429

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