Additional file 1 of Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes

Supplementary Material 1

Detalles Bibliográficos
Autores: Morales-Díaz, Noemia, Sushko, Svitlana, Campos Domínguez, Lucía, Kopalli, Venkataramana, Golicz, Agnieszka A., Castanera, Raúl, Casacuberta, Josep M.
Tipo de recurso: conjunto de datos
Estado:Versión publicada
Fecha de publicación:2025
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/388706
Acceso en línea:http://hdl.handle.net/10261/388706
Access Level:acceso abierto
Palabra clave:Based pangenomic methodologies
Gypsy elements may
Perform detailed characterization
Two independent ltr
Scans genome sequences
Cotton genomes showed
Identifies tandem ltr
Plant genome evolution
Rt structures showed
Generate genetic variability
Form tandem arrays
Genome evolution
Tandem arrays
Tandem ltr
Rt elements
Rt tandems
Plant kingdom
Plant genomes
Truncated copies
Single insertion
Rt structures
Rt copies
Rt candidates
Retrotransposon structures
Pangenome built
Nested insertions
Important drivers
Highly polymorphic
Differentiating intra
Computational pipeline
Complex structures
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repository_id_str
spelling Additional file 1 of Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomesMorales-Díaz, NoemiaSushko, SvitlanaCampos Domínguez, LucíaKopalli, VenkataramanaGolicz, Agnieszka A.Castanera, RaúlCasacuberta, Josep M.Based pangenomic methodologiesGypsy elements mayPerform detailed characterizationTwo independent ltrScans genome sequencesCotton genomes showedIdentifies tandem ltrPlant genome evolutionRt structures showedGenerate genetic variabilityForm tandem arraysGenome evolutionTandem arraysTandem ltrRt elementsRt tandemsPlant kingdomPlant genomesTruncated copiesSingle insertionRt structuresRt copiesRt candidatesRetrotransposon structuresPangenome builtNested insertionsImportant driversHighly polymorphicDifferentiating intraComputational pipelineComplex structuresSupplementary Material 1Peer reviewedFigshareConsejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202520252025info:eu-repo/semantics/datasethttp://purl.org/coar/resource_type/c_ddb1Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/mswordhttp://hdl.handle.net/10261/388706reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)InglésMorales-Díaz, Noemia; Sushko, Svitlana; Campos-Dominguez, Lucía; Kopalli, Venkataramana; Golicz, Agnieszka A.; Castanera, Raúl; Casacuberta, J. M. http://dx.doi.org/10.1186/s13100-025-00347-y. http://hdl.handle.net/10261/388693https://doi.org/10.6084/m9.figshare.28587058.v1Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3887062026-05-22T06:33:51Z
dc.title.none.fl_str_mv Additional file 1 of Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes
title Additional file 1 of Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes
spellingShingle Additional file 1 of Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes
Morales-Díaz, Noemia
Based pangenomic methodologies
Gypsy elements may
Perform detailed characterization
Two independent ltr
Scans genome sequences
Cotton genomes showed
Identifies tandem ltr
Plant genome evolution
Rt structures showed
Generate genetic variability
Form tandem arrays
Genome evolution
Tandem arrays
Tandem ltr
Rt elements
Rt tandems
Plant kingdom
Plant genomes
Truncated copies
Single insertion
Rt structures
Rt copies
Rt candidates
Retrotransposon structures
Pangenome built
Nested insertions
Important drivers
Highly polymorphic
Differentiating intra
Computational pipeline
Complex structures
title_short Additional file 1 of Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes
title_full Additional file 1 of Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes
title_fullStr Additional file 1 of Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes
title_full_unstemmed Additional file 1 of Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes
title_sort Additional file 1 of Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes
dc.creator.none.fl_str_mv Morales-Díaz, Noemia
Sushko, Svitlana
Campos Domínguez, Lucía
Kopalli, Venkataramana
Golicz, Agnieszka A.
Castanera, Raúl
Casacuberta, Josep M.
author Morales-Díaz, Noemia
author_facet Morales-Díaz, Noemia
Sushko, Svitlana
Campos Domínguez, Lucía
Kopalli, Venkataramana
Golicz, Agnieszka A.
Castanera, Raúl
Casacuberta, Josep M.
author_role author
author2 Sushko, Svitlana
Campos Domínguez, Lucía
Kopalli, Venkataramana
Golicz, Agnieszka A.
Castanera, Raúl
Casacuberta, Josep M.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Based pangenomic methodologies
Gypsy elements may
Perform detailed characterization
Two independent ltr
Scans genome sequences
Cotton genomes showed
Identifies tandem ltr
Plant genome evolution
Rt structures showed
Generate genetic variability
Form tandem arrays
Genome evolution
Tandem arrays
Tandem ltr
Rt elements
Rt tandems
Plant kingdom
Plant genomes
Truncated copies
Single insertion
Rt structures
Rt copies
Rt candidates
Retrotransposon structures
Pangenome built
Nested insertions
Important drivers
Highly polymorphic
Differentiating intra
Computational pipeline
Complex structures
topic Based pangenomic methodologies
Gypsy elements may
Perform detailed characterization
Two independent ltr
Scans genome sequences
Cotton genomes showed
Identifies tandem ltr
Plant genome evolution
Rt structures showed
Generate genetic variability
Form tandem arrays
Genome evolution
Tandem arrays
Tandem ltr
Rt elements
Rt tandems
Plant kingdom
Plant genomes
Truncated copies
Single insertion
Rt structures
Rt copies
Rt candidates
Retrotransposon structures
Pangenome built
Nested insertions
Important drivers
Highly polymorphic
Differentiating intra
Computational pipeline
Complex structures
description Supplementary Material 1
publishDate 2025
dc.date.none.fl_str_mv 2025
2025
2025
dc.type.none.fl_str_mv info:eu-repo/semantics/dataset
http://purl.org/coar/resource_type/c_ddb1
Publisher's version
info:eu-repo/semantics/publishedVersion
format dataset
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/388706
url http://hdl.handle.net/10261/388706
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Morales-Díaz, Noemia; Sushko, Svitlana; Campos-Dominguez, Lucía; Kopalli, Venkataramana; Golicz, Agnieszka A.; Castanera, Raúl; Casacuberta, J. M. http://dx.doi.org/10.1186/s13100-025-00347-y. http://hdl.handle.net/10261/388693
https://doi.org/10.6084/m9.figshare.28587058.v1
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/msword
dc.publisher.none.fl_str_mv Figshare
publisher.none.fl_str_mv Figshare
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15,811543

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