Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study

Allelopathy has been considered as a natural method of weed control. Despite the nature of allelochemical compounds has been studied, little is known about the genetic basis underlying allelopathy. However, it is known that rice exhibits diverse allelopathic potentials across varieties, and breeding...

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Autores: García-Romeral, Julia, Castanera, Raúl|||0000-0002-3772-7727, Casacuberta, Josep M.|||0000-0002-5609-4152, Domingo, Concha|||0000-0002-7204-7591
Tipo de recurso: artículo
Fecha de publicación:2024
País:España
Institución:Universitat Autònoma de Barcelona
Repositorio:Dipòsit Digital de Documents de la UAB
Idioma:inglés
OAI Identifier:oai:ddd.uab.cat:296862
Acceso en línea:https://ddd.uab.cat/record/296862
https://dx.doi.org/urn:doi:10.1186/s12284-024-00701-3
Access Level:acceso abierto
Palabra clave:Allelopathy
QTL
Genome Wide Association Study (GWAS)
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spelling Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association StudyGarcía-Romeral, JuliaCastanera, Raúl|||0000-0002-3772-7727Casacuberta, Josep M.|||0000-0002-5609-4152Domingo, Concha|||0000-0002-7204-7591AllelopathyQTLGenome Wide Association Study (GWAS)Allelopathy has been considered as a natural method of weed control. Despite the nature of allelochemical compounds has been studied, little is known about the genetic basis underlying allelopathy. However, it is known that rice exhibits diverse allelopathic potentials across varieties, and breeding for rice plants exhibiting allelopathic potential conferring an advantage against weeds in paddy fields would be highly desirable. Knowledge of the gene factors and the identification of the genomic regions responsible for allelopathy would facilitate breeding programs. Taking advantage of the existing genetic diversity in rice, particularly in temperate japonica rice, we conducted a comprehensive investigation into the genetic determinants that contribute to rice allelopathy. Employing Genome-Wide Association Study, we identified four Quantitative Trait Loci, with the most promising loci situated on chromosome 2 and 5. Subsequent inspection of the genes located within these QTLs revealed genes associated with the biosynthesis of secondary metabolites such as Phenylalanine Ammonia Lyase (PAL), a key enzyme in the synthesis of phenolic compounds, and two genes coding for R2R3-type MYB transcription factors. The identification of these two QTLs associated to allelopathy in rice provides a useful tool for further exploration and targeted breeding strategies. 22024-01-0120242024-01-01Articlehttp://purl.org/coar/resource_type/c_6501VoRhttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleapplication/pdfhttps://ddd.uab.cat/record/296862https://dx.doi.org/urn:doi:10.1186/s12284-024-00701-3reponame:Dipòsit Digital de Documents de la UABinstname:Universitat Autònoma de BarcelonaInglésengAgencia Estatal de Investigación https://doi.org/10.13039/501100011033 PLEC2021-007786Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PID2019-104099RR-I00Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PID2019-106374RB-I00Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PID2022-143167NB-I00Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PID2019-108829RB-I00Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PRE2019-089034Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 IJC2020-045949-Iopen accesshttp://purl.org/coar/access_right/c_abf2Aquest document està subjecte a una llicència d'ús Creative Commons. Es permet la reproducció total o parcial, la distribució, la comunicació pública de l'obra i la creació d'obres derivades, fins i tot amb finalitats comercials, sempre i quan es reconegui l'autoria de l'obra original.https://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessoai:ddd.uab.cat:2968622026-06-06T12:50:31Z
dc.title.none.fl_str_mv Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study
title Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study
spellingShingle Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study
García-Romeral, Julia
Allelopathy
QTL
Genome Wide Association Study (GWAS)
title_short Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study
title_full Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study
title_fullStr Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study
title_full_unstemmed Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study
title_sort Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study
dc.creator.none.fl_str_mv García-Romeral, Julia
Castanera, Raúl|||0000-0002-3772-7727
Casacuberta, Josep M.|||0000-0002-5609-4152
Domingo, Concha|||0000-0002-7204-7591
author García-Romeral, Julia
author_facet García-Romeral, Julia
Castanera, Raúl|||0000-0002-3772-7727
Casacuberta, Josep M.|||0000-0002-5609-4152
Domingo, Concha|||0000-0002-7204-7591
author_role author
author2 Castanera, Raúl|||0000-0002-3772-7727
Casacuberta, Josep M.|||0000-0002-5609-4152
Domingo, Concha|||0000-0002-7204-7591
author2_role author
author
author
dc.subject.none.fl_str_mv Allelopathy
QTL
Genome Wide Association Study (GWAS)
topic Allelopathy
QTL
Genome Wide Association Study (GWAS)
description Allelopathy has been considered as a natural method of weed control. Despite the nature of allelochemical compounds has been studied, little is known about the genetic basis underlying allelopathy. However, it is known that rice exhibits diverse allelopathic potentials across varieties, and breeding for rice plants exhibiting allelopathic potential conferring an advantage against weeds in paddy fields would be highly desirable. Knowledge of the gene factors and the identification of the genomic regions responsible for allelopathy would facilitate breeding programs. Taking advantage of the existing genetic diversity in rice, particularly in temperate japonica rice, we conducted a comprehensive investigation into the genetic determinants that contribute to rice allelopathy. Employing Genome-Wide Association Study, we identified four Quantitative Trait Loci, with the most promising loci situated on chromosome 2 and 5. Subsequent inspection of the genes located within these QTLs revealed genes associated with the biosynthesis of secondary metabolites such as Phenylalanine Ammonia Lyase (PAL), a key enzyme in the synthesis of phenolic compounds, and two genes coding for R2R3-type MYB transcription factors. The identification of these two QTLs associated to allelopathy in rice provides a useful tool for further exploration and targeted breeding strategies.
publishDate 2024
dc.date.none.fl_str_mv 2
2024-01-01
2024
2024-01-01
dc.type.none.fl_str_mv Article
http://purl.org/coar/resource_type/c_6501
VoR
http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.openaire.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.none.fl_str_mv https://ddd.uab.cat/record/296862
https://dx.doi.org/urn:doi:10.1186/s12284-024-00701-3
url https://ddd.uab.cat/record/296862
https://dx.doi.org/urn:doi:10.1186/s12284-024-00701-3
dc.language.none.fl_str_mv Inglés
eng
language_invalid_str_mv Inglés
language eng
dc.relation.none.fl_str_mv Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PLEC2021-007786
Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PID2019-104099RR-I00
Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PID2019-106374RB-I00
Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PID2022-143167NB-I00
Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PID2019-108829RB-I00
Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 PRE2019-089034
Agencia Estatal de Investigación https://doi.org/10.13039/501100011033 IJC2020-045949-I
dc.rights.none.fl_str_mv open access
http://purl.org/coar/access_right/c_abf2
https://creativecommons.org/licenses/by/4.0/
dc.rights.openaire.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv open access
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https://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Dipòsit Digital de Documents de la UAB
instname:Universitat Autònoma de Barcelona
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