Influence of Association on Binding of Disaccharides to YKL-39 and hHyal-1 Enzymes

Disaccharide complexes have been shown experimentally to be useful for drug delivery or as an antifouling surface biofilm, and are promising drug-encapsulation and delivery candidates. Although such complexes are intended for medical applications, to date no studies at the molecular level have been...

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Detalles Bibliográficos
Autores: Krzemińska, Agnieszka|||0000-0003-3250-4193, Sánchez-Aparicio, José-Emilio|||0000-0002-3397-8393, Maréchal, Jean-Didier|||0000-0002-8344-9043, Paneth, Agata|||0000-0002-8198-7702, Paneth, Piotr|||0000-0002-3091-8387
Tipo de recurso: artículo
Fecha de publicación:2022
País:España
Institución:Universitat Autònoma de Barcelona
Repositorio:Dipòsit Digital de Documents de la UAB
Idioma:inglés
OAI Identifier:oai:ddd.uab.cat:272312
Acceso en línea:https://ddd.uab.cat/record/272312
https://dx.doi.org/urn:doi:10.3390/ijms23147705
Access Level:acceso abierto
Palabra clave:Disaccharides
Complexation
Docking
DFT
GaudiMM
Descripción
Sumario:Disaccharide complexes have been shown experimentally to be useful for drug delivery or as an antifouling surface biofilm, and are promising drug-encapsulation and delivery candidates. Although such complexes are intended for medical applications, to date no studies at the molecular level have been devoted to the influence of complexation on the enzymatic decomposition of polysaccharides. A theoretical approach to this problem has been hampered by the lack of a suitable computational tool for binding such non-covalent complexes to enzymes. Herein, we combine quantum-mechanical calculations of disaccharides complexes with a nonstandard docking GaudiMM engine that can perform such a task. Our results on four different complexes show that they are mostly stabilized by electrostatic interactions and hydrogen bonds. This strong non-covalent stabilization demonstrates the studied complexes are some excellent candidates for self-assembly smart materials, useful for drug encapsulation and delivery. Their advantage lies also in their biocompatible and biodegradable character.