Domain composition and architecture of Huge proteins [Dataset]

(A-C) Stacked bar distribution of PFAM domains, from A to C is bacteria, eukaryota and archaea, respectively. Each bar in the distribution is colored based on contribution from each phyla. Calculations were performed on a restricted subset limiting the maximum number of proteomes from each phylum to...

ver descrição completa

Detalhes bibliográficos
Autores: Amaral, Anibal S., Devos, Damien P.
Tipo de documento: conjunto de datos
Estado:Versão publicada
Data de publicação:2024
País:España
Recursos:Consejo Superior de Investigaciones Científicas (CSIC)
Repositório:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/385270
Acesso em linha:http://hdl.handle.net/10261/385270
Access Level:Acceso aberto
Palavra-chave:Protein length distribution
5000 amino acids
Ribosomomal peptide synthesis
div >< p
Recognition surface proteins
Key cellular processes
Proteomes
Polyketide synthesis
Planctomycetota </
Elusimicrobiota </
Ubiquitin ligases
Potential impact
Overlooked aspect
Neglected giants
Majority found
Huge proteins
Host attachment
Homologous sequences
Highest propensity
Higher tendency
Functions related
Functional groups
Findings underscore
Examining uniprotkb
Ecological roles
Cytoskeleton organization
Average eukaryote
id ES_e5cd6bf11cdb5b70de3ecade551d5fac
oai_identifier_str oai:digital.csic.es:10261/385270
network_acronym_str ES
network_name_str España
repository_id_str
spelling Domain composition and architecture of Huge proteins [Dataset]Amaral, Anibal S.Devos, Damien P.Protein length distribution5000 amino acidsRibosomomal peptide synthesisdiv >< pRecognition surface proteinsKey cellular processesProteomesPolyketide synthesisPlanctomycetota </Elusimicrobiota </Ubiquitin ligasesPotential impactOverlooked aspectNeglected giantsMajority foundHuge proteinsHost attachmentHomologous sequencesHighest propensityHigher tendencyFunctions relatedFunctional groupsFindings underscoreExamining uniprotkbEcological rolesCytoskeleton organizationAverage eukaryote(A-C) Stacked bar distribution of PFAM domains, from A to C is bacteria, eukaryota and archaea, respectively. Each bar in the distribution is colored based on contribution from each phyla. Calculations were performed on a restricted subset limiting the maximum number of proteomes from each phylum to 50, as to not skew the distribution. Only the top 15 phyla in terms of contribution is shown, except for archaea. The distinct taxonomic pattern of each bar illustrates the differing contributions from each phyla. (D-F) Most common architectures of bacteria, eukaryotes and archaea, respectively. Sizes of the proteins are representative and not to scale.Peer reviewedPublic Library of ScienceConsejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202520252024info:eu-repo/semantics/datasethttp://purl.org/coar/resource_type/c_ddb1Publisher's versioninfo:eu-repo/semantics/publishedVersionimage/tiffhttp://hdl.handle.net/10261/385270reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)InglésAmaral, Anibal S.; Devos, Damien P. The neglected giants: Uncovering the prevalence and functional groups of huge proteins in proteomes. https://doi.org/10.1371/journal.pcbi.1012459 . http://hdl.handle.net/10261/379969https://doi.org/10.1371/journal.pcbi.1012459.g004Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3852702026-05-22T06:33:51Z
dc.title.none.fl_str_mv Domain composition and architecture of Huge proteins [Dataset]
title Domain composition and architecture of Huge proteins [Dataset]
spellingShingle Domain composition and architecture of Huge proteins [Dataset]
Amaral, Anibal S.
Protein length distribution
5000 amino acids
Ribosomomal peptide synthesis
div >< p
Recognition surface proteins
Key cellular processes
Proteomes
Polyketide synthesis
Planctomycetota </
Elusimicrobiota </
Ubiquitin ligases
Potential impact
Overlooked aspect
Neglected giants
Majority found
Huge proteins
Host attachment
Homologous sequences
Highest propensity
Higher tendency
Functions related
Functional groups
Findings underscore
Examining uniprotkb
Ecological roles
Cytoskeleton organization
Average eukaryote
title_short Domain composition and architecture of Huge proteins [Dataset]
title_full Domain composition and architecture of Huge proteins [Dataset]
title_fullStr Domain composition and architecture of Huge proteins [Dataset]
title_full_unstemmed Domain composition and architecture of Huge proteins [Dataset]
title_sort Domain composition and architecture of Huge proteins [Dataset]
dc.creator.none.fl_str_mv Amaral, Anibal S.
Devos, Damien P.
author Amaral, Anibal S.
author_facet Amaral, Anibal S.
Devos, Damien P.
author_role author
author2 Devos, Damien P.
author2_role author
dc.contributor.none.fl_str_mv Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Protein length distribution
5000 amino acids
Ribosomomal peptide synthesis
div >< p
Recognition surface proteins
Key cellular processes
Proteomes
Polyketide synthesis
Planctomycetota </
Elusimicrobiota </
Ubiquitin ligases
Potential impact
Overlooked aspect
Neglected giants
Majority found
Huge proteins
Host attachment
Homologous sequences
Highest propensity
Higher tendency
Functions related
Functional groups
Findings underscore
Examining uniprotkb
Ecological roles
Cytoskeleton organization
Average eukaryote
topic Protein length distribution
5000 amino acids
Ribosomomal peptide synthesis
div >< p
Recognition surface proteins
Key cellular processes
Proteomes
Polyketide synthesis
Planctomycetota </
Elusimicrobiota </
Ubiquitin ligases
Potential impact
Overlooked aspect
Neglected giants
Majority found
Huge proteins
Host attachment
Homologous sequences
Highest propensity
Higher tendency
Functions related
Functional groups
Findings underscore
Examining uniprotkb
Ecological roles
Cytoskeleton organization
Average eukaryote
description (A-C) Stacked bar distribution of PFAM domains, from A to C is bacteria, eukaryota and archaea, respectively. Each bar in the distribution is colored based on contribution from each phyla. Calculations were performed on a restricted subset limiting the maximum number of proteomes from each phylum to 50, as to not skew the distribution. Only the top 15 phyla in terms of contribution is shown, except for archaea. The distinct taxonomic pattern of each bar illustrates the differing contributions from each phyla. (D-F) Most common architectures of bacteria, eukaryotes and archaea, respectively. Sizes of the proteins are representative and not to scale.
publishDate 2024
dc.date.none.fl_str_mv 2024
2025
2025
dc.type.none.fl_str_mv info:eu-repo/semantics/dataset
http://purl.org/coar/resource_type/c_ddb1
Publisher's version
info:eu-repo/semantics/publishedVersion
format dataset
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/385270
url http://hdl.handle.net/10261/385270
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Amaral, Anibal S.; Devos, Damien P. The neglected giants: Uncovering the prevalence and functional groups of huge proteins in proteomes. https://doi.org/10.1371/journal.pcbi.1012459 . http://hdl.handle.net/10261/379969
https://doi.org/10.1371/journal.pcbi.1012459.g004
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv image/tiff
dc.publisher.none.fl_str_mv Public Library of Science
publisher.none.fl_str_mv Public Library of Science
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
_version_ 1869422711477895168
score 15,812429

Registros relacionados