Genetic characterization and identification of the table grape accessions preserved in the living collection of Ain Taoujdate (Morocco)

We have characterized the 60 table grape accessions preserved at the living collection of the Domaine Expérimental de Ain Taoujdate (Morocco) through DNA analyses. Genetic profiling based on 13 SSRs and 240 SNP markers identified up to 40 different genotypes, denoting a certain level of redundancy....

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Autores: Zinelabidine, Lalla Hasna, Charafi, Jamal, Haddioui, Abdelmajid, Martínez-Zapater, José M., Ibáñez Marcos, Javier, Tello, Javier
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2024
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/372311
Acceso en línea:http://hdl.handle.net/10261/372311
https://api.elsevier.com/content/abstract/scopus_id/85202766730
Access Level:acceso abierto
Palabra clave:Conservation
Genetic identification
Germplasm
SNP
SSR
Vitis vinifera L.
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network_name_str España
repository_id_str
dc.title.none.fl_str_mv Genetic characterization and identification of the table grape accessions preserved in the living collection of Ain Taoujdate (Morocco)
title Genetic characterization and identification of the table grape accessions preserved in the living collection of Ain Taoujdate (Morocco)
spellingShingle Genetic characterization and identification of the table grape accessions preserved in the living collection of Ain Taoujdate (Morocco)
Zinelabidine, Lalla Hasna
Conservation
Genetic identification
Germplasm
SNP
SSR
Vitis vinifera L.
title_short Genetic characterization and identification of the table grape accessions preserved in the living collection of Ain Taoujdate (Morocco)
title_full Genetic characterization and identification of the table grape accessions preserved in the living collection of Ain Taoujdate (Morocco)
title_fullStr Genetic characterization and identification of the table grape accessions preserved in the living collection of Ain Taoujdate (Morocco)
title_full_unstemmed Genetic characterization and identification of the table grape accessions preserved in the living collection of Ain Taoujdate (Morocco)
title_sort Genetic characterization and identification of the table grape accessions preserved in the living collection of Ain Taoujdate (Morocco)
dc.creator.none.fl_str_mv Zinelabidine, Lalla Hasna
Charafi, Jamal
Haddioui, Abdelmajid
Martínez-Zapater, José M.
Ibáñez Marcos, Javier
Tello, Javier
author Zinelabidine, Lalla Hasna
author_facet Zinelabidine, Lalla Hasna
Charafi, Jamal
Haddioui, Abdelmajid
Martínez-Zapater, José M.
Ibáñez Marcos, Javier
Tello, Javier
author_role author
author2 Charafi, Jamal
Haddioui, Abdelmajid
Martínez-Zapater, José M.
Ibáñez Marcos, Javier
Tello, Javier
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Consejo Superior de Investigaciones Científicas (España)
Agencia Estatal de Investigación (España)
Ministerio de Ciencia, Innovación y Universidades (España)
Ministerio de Ciencia e Innovación (España)
Zinelabidine, Lalla Hasna [0000-0003-0778-4015]
Charafi, Jamal[0000-0003-3301-177X]
Haddioui, Abdelmajid [0000-0001-8860-6194]
Martínez-Zapater, José M. [0000-0001-7217-4454]
Ibáñez Marcos, Javier [0000-0002-6286-5638]
Tello, Javier [0000-0002-6299-5563]
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Conservation
Genetic identification
Germplasm
SNP
SSR
Vitis vinifera L.
topic Conservation
Genetic identification
Germplasm
SNP
SSR
Vitis vinifera L.
description We have characterized the 60 table grape accessions preserved at the living collection of the Domaine Expérimental de Ain Taoujdate (Morocco) through DNA analyses. Genetic profiling based on 13 SSRs and 240 SNP markers identified up to 40 different genotypes, denoting a certain level of redundancy. This information was useful to detect many cases of misspelled accessions, some misnamed varieties, and several potential new synonymies. The comparison of these genetic profiles with international databases led to the identification of 58 accessions as 38 table grape varieties, half of them corresponding to obtentions bred in recent programs of table grape improvement. Only two accessions (named "Diamant Noir" and "Sultanine Rosée") did not match any known genetic profile. We found that "Sultanine Rosée" does not correspond to 'Kishmish Rozovyi', the described pink-berried variant of 'Sultanina'. Indeed, it turned out to be a grape variety not catalogued in international genetic databases that arose from the cross between 'Sultanina' and 'Fokiano', which we suggest to name 'Sultanine Rose Faux'. Besides, the duo detected between the accession "Diamant Noir" and the variety 'Moscato D'Adda' suggests that it might correspond to the table grape variety named 'Diamante Nero' ('Pirovano 57' × 'Moscato D'Adda'). We proved that molecular-assisted parentage analyses could be an efficient approach to suggest an identity for grapevine varieties that lack a matching genotype in international catalogues.
publishDate 2024
dc.date.none.fl_str_mv 2024
2024
2024
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
Publisher's version
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/372311
https://api.elsevier.com/content/abstract/scopus_id/85202766730
url http://hdl.handle.net/10261/372311
https://api.elsevier.com/content/abstract/scopus_id/85202766730
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
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info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-120183RB-I00
info:eu-repo/grantAgreement/AEI//RYC2022-037758-I
Zinelabidine, Lalla Hasna; Charafi, Jamal; Haddioui, Abdelmajid; Martínez-Zapater, José M.; Ibáñez Marcos, Javier ; Tello, Javier; 2024; SSR and SNP profiles obtained for 40 non-redundant grapevine genotypes found in the living collection of Ain Taoujdate (Morocco) [Dataset]; Zenodo; https://doi.org/10.5281/zenodo.11481989
https://doi.org/10.5073/vitis.2024.63.05
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Julius Kühn-Institut
publisher.none.fl_str_mv Julius Kühn-Institut
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
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spelling Genetic characterization and identification of the table grape accessions preserved in the living collection of Ain Taoujdate (Morocco)Zinelabidine, Lalla HasnaCharafi, JamalHaddioui, AbdelmajidMartínez-Zapater, José M.Ibáñez Marcos, JavierTello, JavierConservationGenetic identificationGermplasmSNPSSRVitis vinifera L.We have characterized the 60 table grape accessions preserved at the living collection of the Domaine Expérimental de Ain Taoujdate (Morocco) through DNA analyses. Genetic profiling based on 13 SSRs and 240 SNP markers identified up to 40 different genotypes, denoting a certain level of redundancy. This information was useful to detect many cases of misspelled accessions, some misnamed varieties, and several potential new synonymies. The comparison of these genetic profiles with international databases led to the identification of 58 accessions as 38 table grape varieties, half of them corresponding to obtentions bred in recent programs of table grape improvement. Only two accessions (named "Diamant Noir" and "Sultanine Rosée") did not match any known genetic profile. We found that "Sultanine Rosée" does not correspond to 'Kishmish Rozovyi', the described pink-berried variant of 'Sultanina'. Indeed, it turned out to be a grape variety not catalogued in international genetic databases that arose from the cross between 'Sultanina' and 'Fokiano', which we suggest to name 'Sultanine Rose Faux'. Besides, the duo detected between the accession "Diamant Noir" and the variety 'Moscato D'Adda' suggests that it might correspond to the table grape variety named 'Diamante Nero' ('Pirovano 57' × 'Moscato D'Adda'). We proved that molecular-assisted parentage analyses could be an efficient approach to suggest an identity for grapevine varieties that lack a matching genotype in international catalogues.This work was funded by CSIC through the I-COOP + call 2020 (COOPB20562 project) and by the Spanish grant PID2020- 120183RB-I00 funded by MCIN/AEI/10.13039/501100011033. JT is supported by the Ramón y Cajal Programme (RYC2022- 037758-I) funded by MCIU/AEI/10.13039/501100011033 and the ESF+. We would like to thank Miguel Angulo and Silvia Hernáiz from the ICVV for their technical laboratory support. Authors also thank the technical and human support provided by SGIker (UPV/EHU/ERDF, EU) and CIBIR for SNP and SSR genotyping, respectively. The authors thank the numerous collaborators whose contributions increased the number of genotypes of the ICVV-DNA databasePeer reviewedJulius Kühn-InstitutConsejo Superior de Investigaciones Científicas (España)Agencia Estatal de Investigación (España)Ministerio de Ciencia, Innovación y Universidades (España)Ministerio de Ciencia e Innovación (España)Zinelabidine, Lalla Hasna [0000-0003-0778-4015]Charafi, Jamal[0000-0003-3301-177X]Haddioui, Abdelmajid [0000-0001-8860-6194]Martínez-Zapater, José M. [0000-0001-7217-4454]Ibáñez Marcos, Javier [0000-0002-6286-5638]Tello, Javier [0000-0002-6299-5563]Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202420242024info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/pdfhttp://hdl.handle.net/10261/372311https://api.elsevier.com/content/abstract/scopus_id/85202766730reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-120183RB-I00info:eu-repo/grantAgreement/AEI//RYC2022-037758-IZinelabidine, Lalla Hasna; Charafi, Jamal; Haddioui, Abdelmajid; Martínez-Zapater, José M.; Ibáñez Marcos, Javier ; Tello, Javier; 2024; SSR and SNP profiles obtained for 40 non-redundant grapevine genotypes found in the living collection of Ain Taoujdate (Morocco) [Dataset]; Zenodo; https://doi.org/10.5281/zenodo.11481989https://doi.org/10.5073/vitis.2024.63.05Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3723112026-05-22T06:33:51Z
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