Nonsymmetric moving breather collisions in the Peyrard-Bishop DNA model
We study nonsymmetric collisions of moving breathers (MBs) in the Peyrard-Bishop DNA model. In this paper we have considered the following types of nonsymmetric collisions: head-on collisions of two breathers traveling with different velocities; collisions of moving breathers with a stationary trapp...
| Authors: | , , , |
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| Format: | article |
| Status: | Versión aceptada para publicación |
| Publication Date: | 2011 |
| Country: | España |
| Institution: | Universidad de Sevilla (US) |
| Repository: | idUS. Depósito de Investigación de la Universidad de Sevilla |
| OAI Identifier: | oai:idus.us.es:11441/36617 |
| Online Access: | http://hdl.handle.net/11441/36617 https://doi.org/10.3934/dcdss.2011.4.995 |
| Access Level: | Open access |
| Keyword: | Peyrard-Bishop DNA model DNA Klein-Gordon chains Moving breathers |
| Summary: | We study nonsymmetric collisions of moving breathers (MBs) in the Peyrard-Bishop DNA model. In this paper we have considered the following types of nonsymmetric collisions: head-on collisions of two breathers traveling with different velocities; collisions of moving breathers with a stationary trapped breather; and collisions of moving breathers traveling with the same direction. The various main observed phenomena are: one moving breather gets trapped at the collision region, and the other one is reflected; breather fusion without trapping, with the appearance of a new moving breather; and breather generation without trapping, with the appearance of new moving breathers traveling either with the same or different directions. For comparison we have included some results of a previous paper concerning to symmetric collisions, where two identical moving breathers traveling with opposite velocities collide. For symmetric collisions, the main observed phenomena are: breather generation with trapping, with the appearance of two new moving breathers with opposite velocities and a stationary breather trapped at the collision region; and breather generation without trapping, with the appearance of new moving breathers with opposite velocities. A common feature for all types of collisions is that the collision outcome depends on the internal structure of the moving breathers and the exact number of pair-bases that initially separates the stationary breathers when they are perturbed. As some nonsymmetric collisions result in the generation of a new stationary trapped breather of larger energy, the trapping phenomenon could play an important part of the complex mechanisms involved in the initiation of the DNA transcription processes. |
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