INDISIM-YEAST, an individual-based model to study yeast

INDISIM-YEAST, an individual-based simulator, models the evolution of a yeast population by setting up rules of behaviour for each individual cell according to their own biological rules and characteristics. It takes into account the uptake, metabolism, budding reproduction and viability of the yeas...

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Detalles Bibliográficos
Autores: Ginovart Gisbert, Marta|||0000-0002-7888-5107, Xifré, Joan, López Codina, Daniel|||0000-0002-0408-4526, Silbert, Moises
Tipo de recurso: capítulo de libro
Fecha de publicación:2007
País:España
Institución:Universitat Politècnica de Catalunya (UPC)
Repositorio:UPCommons. Portal del coneixement obert de la UPC
Idioma:inglés
OAI Identifier:oai:upcommons.upc.edu:2117/1479
Acceso en línea:https://hdl.handle.net/2117/1479
Access Level:acceso abierto
Palabra clave:Yeast
Llevats
Àrees temàtiques de la UPC::Enginyeria agroalimentària::Indústries agroalimentàries::Biotecnologia alimentària
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spelling INDISIM-YEAST, an individual-based model to study yeastGinovart Gisbert, Marta|||0000-0002-7888-5107Xifré, JoanLópez Codina, Daniel|||0000-0002-0408-4526Silbert, MoisesYeastLlevatsLlevatsÀrees temàtiques de la UPC::Enginyeria agroalimentària::Indústries agroalimentàries::Biotecnologia alimentàriaINDISIM-YEAST, an individual-based simulator, models the evolution of a yeast population by setting up rules of behaviour for each individual cell according to their own biological rules and characteristics. It takes into account the uptake, metabolism, budding reproduction and viability of the yeast cells, over a period of time in the bulk of a liquid medium, occupying a three dimensional closed spatial grid with two kinds of particles (glucose and ethanol). Each microorganism is characterized by its biomass, genealogical age, states in the budding cellular reproduction cycle and position in the space among others. Simulations are carried out for population properties (global properties), as well as for those properties that pertain to individual yeast cells (microscopic properties). The results of the simulations are in good qualitative agreement with established experimental trends.Peer ReviewedFormatex20072007-01-0120082008-01-15book parthttp://purl.org/coar/resource_type/c_3248NAhttp://purl.org/coar/version/c_be7fb7dd8ff6fe43info:eu-repo/semantics/bookPartapplication/pdfhttps://hdl.handle.net/2117/1479reponame:UPCommons. Portal del coneixement obert de la UPCinstname:Universitat Politècnica de Catalunya (UPC)Inglésengopen accesshttp://purl.org/coar/access_right/c_abf2info:eu-repo/semantics/openAccessoai:upcommons.upc.edu:2117/14792026-05-27T15:37:01Z
dc.title.none.fl_str_mv INDISIM-YEAST, an individual-based model to study yeast
title INDISIM-YEAST, an individual-based model to study yeast
spellingShingle INDISIM-YEAST, an individual-based model to study yeast
Ginovart Gisbert, Marta|||0000-0002-7888-5107
Yeast
Llevats
Llevats
Àrees temàtiques de la UPC::Enginyeria agroalimentària::Indústries agroalimentàries::Biotecnologia alimentària
title_short INDISIM-YEAST, an individual-based model to study yeast
title_full INDISIM-YEAST, an individual-based model to study yeast
title_fullStr INDISIM-YEAST, an individual-based model to study yeast
title_full_unstemmed INDISIM-YEAST, an individual-based model to study yeast
title_sort INDISIM-YEAST, an individual-based model to study yeast
dc.creator.none.fl_str_mv Ginovart Gisbert, Marta|||0000-0002-7888-5107
Xifré, Joan
López Codina, Daniel|||0000-0002-0408-4526
Silbert, Moises
author Ginovart Gisbert, Marta|||0000-0002-7888-5107
author_facet Ginovart Gisbert, Marta|||0000-0002-7888-5107
Xifré, Joan
López Codina, Daniel|||0000-0002-0408-4526
Silbert, Moises
author_role author
author2 Xifré, Joan
López Codina, Daniel|||0000-0002-0408-4526
Silbert, Moises
author2_role author
author
author
dc.subject.none.fl_str_mv Yeast
Llevats
Llevats
Àrees temàtiques de la UPC::Enginyeria agroalimentària::Indústries agroalimentàries::Biotecnologia alimentària
topic Yeast
Llevats
Llevats
Àrees temàtiques de la UPC::Enginyeria agroalimentària::Indústries agroalimentàries::Biotecnologia alimentària
description INDISIM-YEAST, an individual-based simulator, models the evolution of a yeast population by setting up rules of behaviour for each individual cell according to their own biological rules and characteristics. It takes into account the uptake, metabolism, budding reproduction and viability of the yeast cells, over a period of time in the bulk of a liquid medium, occupying a three dimensional closed spatial grid with two kinds of particles (glucose and ethanol). Each microorganism is characterized by its biomass, genealogical age, states in the budding cellular reproduction cycle and position in the space among others. Simulations are carried out for population properties (global properties), as well as for those properties that pertain to individual yeast cells (microscopic properties). The results of the simulations are in good qualitative agreement with established experimental trends.
publishDate 2007
dc.date.none.fl_str_mv 2007
2007-01-01
2008
2008-01-15
dc.type.none.fl_str_mv book part
http://purl.org/coar/resource_type/c_3248
NA
http://purl.org/coar/version/c_be7fb7dd8ff6fe43
dc.type.openaire.fl_str_mv info:eu-repo/semantics/bookPart
format bookPart
dc.identifier.none.fl_str_mv https://hdl.handle.net/2117/1479
url https://hdl.handle.net/2117/1479
dc.language.none.fl_str_mv Inglés
eng
language_invalid_str_mv Inglés
language eng
dc.rights.none.fl_str_mv open access
http://purl.org/coar/access_right/c_abf2
dc.rights.openaire.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv open access
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Formatex
publisher.none.fl_str_mv Formatex
dc.source.none.fl_str_mv reponame:UPCommons. Portal del coneixement obert de la UPC
instname:Universitat Politècnica de Catalunya (UPC)
instname_str Universitat Politècnica de Catalunya (UPC)
reponame_str UPCommons. Portal del coneixement obert de la UPC
collection UPCommons. Portal del coneixement obert de la UPC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15,300724

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