A phylogenomic look into the systematics of oceanic squids (order Oegopsida)

24 pages, 4 figures, 1 table.-- Data availability: The data underlying this article are available in the GenBank Nucleotide Database at https://www.ncbi.nlm.nih.gov/genbank/ and can be accessed with the GenBank accession numbers MW233711–MW233782 and MW255551–MW255585. The FastQ files can be accesse...

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Detalles Bibliográficos
Autores: Fernández-Álvarez, Fernando Ángel, Taite, Morag, Vecchione, Michael, Villanueva, Roger, Allcock, A. Louise
Tipo de recurso: artículo
Fecha de publicación:2022
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/267184
Acceso en línea:http://hdl.handle.net/10261/267184
Access Level:acceso abierto
Palabra clave:Cephalopoda
Open-eyed squids
Phylogenomics
Taxonomy
Mitogenome gene order
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spelling A phylogenomic look into the systematics of oceanic squids (order Oegopsida)Fernández-Álvarez, Fernando ÁngelTaite, MoragVecchione, MichaelVillanueva, RogerAllcock, A. LouiseCephalopodaOpen-eyed squidsPhylogenomicsTaxonomyMitogenome gene order24 pages, 4 figures, 1 table.-- Data availability: The data underlying this article are available in the GenBank Nucleotide Database at https://www.ncbi.nlm.nih.gov/genbank/ and can be accessed with the GenBank accession numbers MW233711–MW233782 and MW255551–MW255585. The FastQ files can be accessed within the GenBank Nucleotide Database with the BioProject accession number PRJNA716134Oceanic squids of the order Oegopsida are ecologically and economically important members of the pelagic environment. They are the most diverse group of cephalopods, with 24 families that are divergent morphologically. Despite their importance, knowledge of phylogenetic relationships among oegopsids is less than that among neritic cephalopods. Here, we provide the complete mitogenomes and the nuclear 18S and 28S ribosomal genes for 35 selected oceanic squids, which were generated using genome skimming. We performed maximum likelihood and Bayesian inference analyses that included 21 of the 24 oegopsid families. In our analyses, the architeuthid, chiroteuthid and enoploteuthid family groups, which have been proposed previously based on morphological and natural history characteristics, were retrieved as monophyletic. The morphologically divergent Cranchiidae formed a well-supported clade with families Ommastrephidae and Thysanoteuthidae, with a unique mitochondrial gene order. The family Lycoteuthidae was revealed as paraphyletic and contained Pyroteuthidae. Thus, the two lycoteuthid subfamilies are herein elevated to family level, increasing the number of oegopsid squid families to 25. In order to describe the diversity and evolutionary trends of oegopsid squids accurately, the superfamilies Architeuthoidea, Chiroteuthoidea, Cranchioidea and Enoploteuthoidea are resurrected from the literature, and the superfamilies Cycloteuthoidea, Octopoteuthoidea and Pholidoteuthoidea are proposed. The phylogenetic positions of Gonatidae, Histioteuthidae and Onychoteuthidae were not stable in our phylogenetic analyses and are not assigned to a superfamily. This study supports the utility of genome skimming to solve the phylogenetic relationships of oceanic squidsSpecimens were collected primarily during the research project MAFIA (CTM2012-39587-C04-03) and BATHYPELAGIC (CTM2016-78853-R), funded by the Spanish Ministry of Economy and Competitiveness (MINECO/ FEDER/EU). F.Á.F.-Á. was supported by an Irish Research Council–Government of Ireland Postdoctoral Fellowship Award (ref. GOIPD/2019/460). M.T. is funded by a PhD fellowship from the Irish Research Council and is supported by the Dr Tony Ryan Research Fund. Support to R.V. was provided by the Spanish government through the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S) and the European Commission (SUMMER project, GA-817806)Peer reviewedLinnean Society of LondonMinisterio de Economía y Competitividad (España)Irish Research CouncilNational University of IrelandAgencia Estatal de Investigación (España)European CommissionConsejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202220222022info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501http://hdl.handle.net/10261/267184reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/MINECO//CTM2016-78853-Rinfo:eu-repo/grantAgreement/EC/H2020/817806https://doi.org/10.1093/zoolinnean/zlab069Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/2671842026-05-22T06:33:51Z
dc.title.none.fl_str_mv A phylogenomic look into the systematics of oceanic squids (order Oegopsida)
title A phylogenomic look into the systematics of oceanic squids (order Oegopsida)
spellingShingle A phylogenomic look into the systematics of oceanic squids (order Oegopsida)
Fernández-Álvarez, Fernando Ángel
Cephalopoda
Open-eyed squids
Phylogenomics
Taxonomy
Mitogenome gene order
title_short A phylogenomic look into the systematics of oceanic squids (order Oegopsida)
title_full A phylogenomic look into the systematics of oceanic squids (order Oegopsida)
title_fullStr A phylogenomic look into the systematics of oceanic squids (order Oegopsida)
title_full_unstemmed A phylogenomic look into the systematics of oceanic squids (order Oegopsida)
title_sort A phylogenomic look into the systematics of oceanic squids (order Oegopsida)
dc.creator.none.fl_str_mv Fernández-Álvarez, Fernando Ángel
Taite, Morag
Vecchione, Michael
Villanueva, Roger
Allcock, A. Louise
author Fernández-Álvarez, Fernando Ángel
author_facet Fernández-Álvarez, Fernando Ángel
Taite, Morag
Vecchione, Michael
Villanueva, Roger
Allcock, A. Louise
author_role author
author2 Taite, Morag
Vecchione, Michael
Villanueva, Roger
Allcock, A. Louise
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Ministerio de Economía y Competitividad (España)
Irish Research Council
National University of Ireland
Agencia Estatal de Investigación (España)
European Commission
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Cephalopoda
Open-eyed squids
Phylogenomics
Taxonomy
Mitogenome gene order
topic Cephalopoda
Open-eyed squids
Phylogenomics
Taxonomy
Mitogenome gene order
description 24 pages, 4 figures, 1 table.-- Data availability: The data underlying this article are available in the GenBank Nucleotide Database at https://www.ncbi.nlm.nih.gov/genbank/ and can be accessed with the GenBank accession numbers MW233711–MW233782 and MW255551–MW255585. The FastQ files can be accessed within the GenBank Nucleotide Database with the BioProject accession number PRJNA716134
publishDate 2022
dc.date.none.fl_str_mv 2022
2022
2022
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
format article
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/267184
url http://hdl.handle.net/10261/267184
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv #PLACEHOLDER_PARENT_METADATA_VALUE#
#PLACEHOLDER_PARENT_METADATA_VALUE#
info:eu-repo/grantAgreement/MINECO//CTM2016-78853-R
info:eu-repo/grantAgreement/EC/H2020/817806
https://doi.org/10.1093/zoolinnean/zlab069
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Linnean Society of London
publisher.none.fl_str_mv Linnean Society of London
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15,30478

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