CReasPy-Cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system.
Over the past decade, a new strategy was developed to bypass the difficulties to genetically engineer some microbial species by transferring (or "cloning") their genome into another organism that is amenable to efficient genetic modifications and therefore acts as a living workbenc...
| Autores: | , , , , , , , , |
|---|---|
| Tipo de recurso: | artículo |
| Estado: | Versión publicada |
| Fecha de publicación: | 2019 |
| País: | España |
| Institución: | Universitat Pompeu Fabra |
| Repositorio: | Repositorio Digital de la UPF |
| OAI Identifier: | oai:repositori.upf.edu:10230/43900 |
| Acceso en línea: | http://hdl.handle.net/10230/43900 http://dx.doi.org/10.1021/acssynbio.9b00224 |
| Access Level: | acceso abierto |
| Palabra clave: | CRISPR-Cas9 Saccharomyces cerevisiae Genome cloning Genome editing Genome transplantation Mycoplasma |
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CReasPy-Cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system.Ruiz, EstelleTalenton, VincentDubrana, Marie-PierreGuesdon, GabrielleLluch-Senar, Maria 1982-Salin, FranckSirand-Pugnet, PascalArfi, YonathanLartigue, CaroleCRISPR-Cas9Saccharomyces cerevisiaeGenome cloningGenome editingGenome transplantationMycoplasmaOver the past decade, a new strategy was developed to bypass the difficulties to genetically engineer some microbial species by transferring (or "cloning") their genome into another organism that is amenable to efficient genetic modifications and therefore acts as a living workbench. As such, the yeast Saccharomyces cerevisiae has been used to clone and engineer genomes from viruses, bacteria, and algae. The cloning step requires the insertion of yeast genetic elements in the genome of interest, in order to drive its replication and maintenance as an artificial chromosome in the host cell. Current methods used to introduce these genetic elements are still unsatisfactory, due either to their random nature (transposon) or the requirement for unique restriction sites at specific positions (TAR cloning). Here we describe the CReasPy-cloning, a new method that combines both the ability of Cas9 to cleave DNA at a user-specified locus and the yeast's highly efficient homologous recombination to simultaneously clone and engineer a bacterial chromosome in yeast. Using the 0.816 Mbp genome of Mycoplasma pneumoniae as a proof of concept, we demonstrate that our method can be used to introduce the yeast genetic element at any location in the bacterial chromosome while simultaneously deleting various genes or group of genes. We also show that CReasPy-cloning can be used to edit up to three independent genomic loci at the same time with an efficiency high enough to warrant the screening of a small (<50) number of clones, allowing for significantly shortened genome engineering cycle times.This work is part of the European MiniCell project “A model-driven approach to minimal cell engineering for medical therapy” selected by ANR, in the frame of the ERASynBio second Joint Call for Transnational Research Projects (No. ANR-15-SYNB-0001-04). It has also been supported by the National Science Foundation (Grant No. IOS-1110151) and the European Union’s Horizon 2020 research and innovation program under Grant Agreement No. 634942.American Chemical Society (ACS)202020202019info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfapplication/pdfhttp://hdl.handle.net/10230/43900http://dx.doi.org/10.1021/acssynbio.9b00224reponame:Repositorio Digital de la UPFinstname:Universitat Pompeu FabraInglésACS Synth Biol. 2019; 8(11):2547-57info:eu-repo/grantAgreement/EC/H2020/634942© 2019 American Chemical Society. This is an open access article published under an ACS AuthorChoice License, which permits copying and redistribution of the article or any adaptations for non-commercial purposes.http://pubs.acs.org/page/policy/authorchoice_termsofuse.htmlinfo:eu-repo/semantics/openAccessoai:repositori.upf.edu:10230/439002026-06-12T07:21:37Z |
| dc.title.none.fl_str_mv |
CReasPy-Cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system. |
| title |
CReasPy-Cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system. |
| spellingShingle |
CReasPy-Cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system. Ruiz, Estelle CRISPR-Cas9 Saccharomyces cerevisiae Genome cloning Genome editing Genome transplantation Mycoplasma |
| title_short |
CReasPy-Cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system. |
| title_full |
CReasPy-Cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system. |
| title_fullStr |
CReasPy-Cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system. |
| title_full_unstemmed |
CReasPy-Cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system. |
| title_sort |
CReasPy-Cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system. |
| dc.creator.none.fl_str_mv |
Ruiz, Estelle Talenton, Vincent Dubrana, Marie-Pierre Guesdon, Gabrielle Lluch-Senar, Maria 1982- Salin, Franck Sirand-Pugnet, Pascal Arfi, Yonathan Lartigue, Carole |
| author |
Ruiz, Estelle |
| author_facet |
Ruiz, Estelle Talenton, Vincent Dubrana, Marie-Pierre Guesdon, Gabrielle Lluch-Senar, Maria 1982- Salin, Franck Sirand-Pugnet, Pascal Arfi, Yonathan Lartigue, Carole |
| author_role |
author |
| author2 |
Talenton, Vincent Dubrana, Marie-Pierre Guesdon, Gabrielle Lluch-Senar, Maria 1982- Salin, Franck Sirand-Pugnet, Pascal Arfi, Yonathan Lartigue, Carole |
| author2_role |
author author author author author author author author |
| dc.subject.none.fl_str_mv |
CRISPR-Cas9 Saccharomyces cerevisiae Genome cloning Genome editing Genome transplantation Mycoplasma |
| topic |
CRISPR-Cas9 Saccharomyces cerevisiae Genome cloning Genome editing Genome transplantation Mycoplasma |
| description |
Over the past decade, a new strategy was developed to bypass the difficulties to genetically engineer some microbial species by transferring (or "cloning") their genome into another organism that is amenable to efficient genetic modifications and therefore acts as a living workbench. As such, the yeast Saccharomyces cerevisiae has been used to clone and engineer genomes from viruses, bacteria, and algae. The cloning step requires the insertion of yeast genetic elements in the genome of interest, in order to drive its replication and maintenance as an artificial chromosome in the host cell. Current methods used to introduce these genetic elements are still unsatisfactory, due either to their random nature (transposon) or the requirement for unique restriction sites at specific positions (TAR cloning). Here we describe the CReasPy-cloning, a new method that combines both the ability of Cas9 to cleave DNA at a user-specified locus and the yeast's highly efficient homologous recombination to simultaneously clone and engineer a bacterial chromosome in yeast. Using the 0.816 Mbp genome of Mycoplasma pneumoniae as a proof of concept, we demonstrate that our method can be used to introduce the yeast genetic element at any location in the bacterial chromosome while simultaneously deleting various genes or group of genes. We also show that CReasPy-cloning can be used to edit up to three independent genomic loci at the same time with an efficiency high enough to warrant the screening of a small (<50) number of clones, allowing for significantly shortened genome engineering cycle times. |
| publishDate |
2019 |
| dc.date.none.fl_str_mv |
2019 2020 2020 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
| format |
article |
| status_str |
publishedVersion |
| dc.identifier.none.fl_str_mv |
http://hdl.handle.net/10230/43900 http://dx.doi.org/10.1021/acssynbio.9b00224 |
| url |
http://hdl.handle.net/10230/43900 http://dx.doi.org/10.1021/acssynbio.9b00224 |
| dc.language.none.fl_str_mv |
Inglés |
| language_invalid_str_mv |
Inglés |
| dc.relation.none.fl_str_mv |
ACS Synth Biol. 2019; 8(11):2547-57 info:eu-repo/grantAgreement/EC/H2020/634942 |
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http://pubs.acs.org/page/policy/authorchoice_termsofuse.html info:eu-repo/semantics/openAccess |
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http://pubs.acs.org/page/policy/authorchoice_termsofuse.html |
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openAccess |
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application/pdf application/pdf |
| dc.publisher.none.fl_str_mv |
American Chemical Society (ACS) |
| publisher.none.fl_str_mv |
American Chemical Society (ACS) |
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reponame:Repositorio Digital de la UPF instname:Universitat Pompeu Fabra |
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Universitat Pompeu Fabra |
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Repositorio Digital de la UPF |
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Repositorio Digital de la UPF |
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15,811543 |