Niche adaptation promoted the evolutionary diversification of tiny ocean predators

10 pages, 5 figures, supporting information https://www.pnas.org/lookup/suppl/doi:10.1073/pnas.2020955118/-/DCSupplemental.-- Data Availability: DNA sequences and metadata from the Malaspina expedition are publicly available at the European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena; accessi...

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Detalhes bibliográficos
Autores: Latorre, Fran, Deutschmann, Ina, Labarre, Aurélie, Obiol, Aleix, Krabberød, Anders K., Pelletier, Eric, Sieracki, Michael E., Cruaud, Corinne, Jaillon, Olivier, Massana, Ramon, Logares, Ramiro
Formato: artículo
Estado:Versión publicada
Fecha de publicación:2021
País:España
Recursos:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/244864
Acesso em linha:http://hdl.handle.net/10261/244864
Access Level:acceso abierto
Palavra-chave:Protists
MAST-4
Biogeography
Ecoevolution
Phagocytosis
id ES_d1d37ff026c38f40e9bfcf18bc0b6c27
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network_acronym_str ES
network_name_str España
repository_id_str
dc.title.none.fl_str_mv Niche adaptation promoted the evolutionary diversification of tiny ocean predators
title Niche adaptation promoted the evolutionary diversification of tiny ocean predators
spellingShingle Niche adaptation promoted the evolutionary diversification of tiny ocean predators
Latorre, Fran
Protists
MAST-4
Biogeography
Ecoevolution
Phagocytosis
title_short Niche adaptation promoted the evolutionary diversification of tiny ocean predators
title_full Niche adaptation promoted the evolutionary diversification of tiny ocean predators
title_fullStr Niche adaptation promoted the evolutionary diversification of tiny ocean predators
title_full_unstemmed Niche adaptation promoted the evolutionary diversification of tiny ocean predators
title_sort Niche adaptation promoted the evolutionary diversification of tiny ocean predators
dc.creator.none.fl_str_mv Latorre, Fran
Deutschmann, Ina
Labarre, Aurélie
Obiol, Aleix
Krabberød, Anders K.
Pelletier, Eric
Sieracki, Michael E.
Cruaud, Corinne
Jaillon, Olivier
Massana, Ramon
Logares, Ramiro
author Latorre, Fran
author_facet Latorre, Fran
Deutschmann, Ina
Labarre, Aurélie
Obiol, Aleix
Krabberød, Anders K.
Pelletier, Eric
Sieracki, Michael E.
Cruaud, Corinne
Jaillon, Olivier
Massana, Ramon
Logares, Ramiro
author_role author
author2 Deutschmann, Ina
Labarre, Aurélie
Obiol, Aleix
Krabberød, Anders K.
Pelletier, Eric
Sieracki, Michael E.
Cruaud, Corinne
Jaillon, Olivier
Massana, Ramon
Logares, Ramiro
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Ministerio de Ciencia e Innovación (España)
Ministerio de Economía y Empresa (España)
Ministerio de Economía y Competitividad (España)
Research Council of Norway
Agencia Estatal de Investigación (España)
European Commission
CSIC - Unidad de Recursos de Información Científica para la Investigación (URICI)
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Protists
MAST-4
Biogeography
Ecoevolution
Phagocytosis
topic Protists
MAST-4
Biogeography
Ecoevolution
Phagocytosis
description 10 pages, 5 figures, supporting information https://www.pnas.org/lookup/suppl/doi:10.1073/pnas.2020955118/-/DCSupplemental.-- Data Availability: DNA sequences and metadata from the Malaspina expedition are publicly available at the European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena; accession numbers PRJEB23913 (66) [18S rRNA genes] and PRJEB25224 (68) [16S rRNA genes]). DNA sequences from Tara Oceans are also stored at ENA with the accession numbers PRJEB6603 (76) for the SAGs, PRJEB6609 (101) for the metatranscriptomes, and PRJEB4352 (100) for the metagenomes (reference Datasets S1 and S4). Genome coassemblies, coding sequence predictions, and amino acid predictions have been deposited in FigShare (DOI: 10.6084/m9.figshare.13072322) (89). All other study data are included in the article and/or supporting information
publishDate 2021
dc.date.none.fl_str_mv 2021
2021
2021
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
Publisher's version
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/244864
url http://hdl.handle.net/10261/244864
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv #PLACEHOLDER_PARENT_METADATA_VALUE#
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info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/CTM2015-69936-P
info:eu-repo/grantAgreement/EC/H2020/675752
https://doi.org/10.1073/pnas.2020955118
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv National Academy of Sciences (U.S.)
publisher.none.fl_str_mv National Academy of Sciences (U.S.)
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
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repository.name.fl_str_mv
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spelling Niche adaptation promoted the evolutionary diversification of tiny ocean predatorsLatorre, FranDeutschmann, InaLabarre, AurélieObiol, AleixKrabberød, Anders K.Pelletier, EricSieracki, Michael E.Cruaud, CorinneJaillon, OlivierMassana, RamonLogares, RamiroProtistsMAST-4BiogeographyEcoevolutionPhagocytosis10 pages, 5 figures, supporting information https://www.pnas.org/lookup/suppl/doi:10.1073/pnas.2020955118/-/DCSupplemental.-- Data Availability: DNA sequences and metadata from the Malaspina expedition are publicly available at the European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena; accession numbers PRJEB23913 (66) [18S rRNA genes] and PRJEB25224 (68) [16S rRNA genes]). DNA sequences from Tara Oceans are also stored at ENA with the accession numbers PRJEB6603 (76) for the SAGs, PRJEB6609 (101) for the metatranscriptomes, and PRJEB4352 (100) for the metagenomes (reference Datasets S1 and S4). Genome coassemblies, coding sequence predictions, and amino acid predictions have been deposited in FigShare (DOI: 10.6084/m9.figshare.13072322) (89). All other study data are included in the article and/or supporting informationUnicellular eukaryotic predators play a crucial role in the functioning of the ocean ecosystem by recycling nutrients and energy that are channeled to upper trophic levels. Traditionally, these evolutionarily diverse organisms have been combined into a single functional group (heterotrophic flagellates), overlooking their organismal differences. Here, we investigated four evolutionarily related species belonging to one cosmopolitan group of uncultured marine picoeukaryotic predators: marine stramenopiles (MAST)-4 (species A, B, C, and E). Co-occurrence and distribution analyses in the global surface ocean indicated contrasting patterns in MAST-4A and C, suggesting adaptation to different temperatures. We then investigated whether these spatial distribution patterns were mirrored by MAST-4 genomic content using single-cell genomics. Analyses of 69 single cells recovered 66 to 83% of the MAST-4A/B/C/E genomes, which displayed substantial interspecies divergence. MAST-4 genomes were similar in terms of broad gene functional categories, but they differed in enzymes of ecological relevance, such as glycoside hydrolases (GHs), which are part of the food degradation machinery in MAST-4. Interestingly, MAST-4 species featuring a similar GH composition (A and C) coexcluded each other in the surface global ocean, while species with a different set of GHs (B and C) appeared to be able to coexist, suggesting further niche diversification associated with prey digestion. We propose that differential niche adaptation to temperature and prey type has promoted adaptive evolutionary diversification in MAST-4. We show that minute ocean predators from the same phylogenetic group may have different biogeography and genomic content, which needs to be accounted for to better comprehend marine food websF.L. was supported by the Spanish National Program Formación de Personal Investigador 2016 (BES-2016-076317, Ministerio de Ciencia e Innovación, Spain). R.L. was supported by a Ramón y Cajal fellowship (RYC-2013-12554, Ministerio de Economía y Empresa, Spain). This work was supported by the projects INTERACTOMICS (Unveiling Core Ecological Interactions in Marine Microbial Communities Using Omics Approaches) (CTM2015-69936-P, MINECO, Spain, to R.L.), MicroEcoSystems (240904, Research Council of Norway, to R.L.), and MINIME (Microbial Evolution and Population Genomics in a Changing Ocean) (PID2019-105775RB-I00, Agencia Estatal de Investigación Spain, to R.L.). I.M.D. and A.L. were supported by the European Union’s Horizon 2020 research and innovation program under Marie Skłodowska-Curie Grant Agreement No. 675752 (SINGEK [Promoting Single Cell Genomics to Explore the Ecology and Evolution of Hidden Microeukaryotes]: http://www.singek.eu). We thank the Consejo Superior de Investigaciones Científicas (CSIC) Open Access Publication Support Initiative through the Unit of Information Resources for Research for helping to cover publication feesWith funding from the Spanish government through the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S)Peer reviewedNational Academy of Sciences (U.S.)Ministerio de Ciencia e Innovación (España)Ministerio de Economía y Empresa (España)Ministerio de Economía y Competitividad (España)Research Council of NorwayAgencia Estatal de Investigación (España)European CommissionCSIC - Unidad de Recursos de Información Científica para la Investigación (URICI)Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202120212021info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionhttp://hdl.handle.net/10261/244864reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/CTM2015-69936-Pinfo:eu-repo/grantAgreement/EC/H2020/675752https://doi.org/10.1073/pnas.2020955118Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/2448642026-05-22T06:33:51Z
score 15.812429

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