The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Software]

The dataset of the Atlas of mitochondrial genetic diversity for Western Palearctic butterflies (COI sequences and metadata) is available in the iodatabase R package available at https://github.com/leondap/iodatabase.-- Here the R script with a few supplementaty files is available in order to replica...

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Detalles Bibliográficos
Autor: Dapporto, Leonardo
Tipo de recurso: conjunto de datos
Fecha de publicación:2022
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/311506
Acceso en línea:http://hdl.handle.net/10261/311506
Access Level:acceso abierto
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spelling The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Software]Dapporto, LeonardoThe dataset of the Atlas of mitochondrial genetic diversity for Western Palearctic butterflies (COI sequences and metadata) is available in the iodatabase R package available at https://github.com/leondap/iodatabase.-- Here the R script with a few supplementaty files is available in order to replicate the figures composing the Atlas.[Motivation] Butterflies represent a model in biology and a flagship group for invertebrate conservation. We provide four new resources for the Western-Palearctic butterflies: 1) An updated checklist comprising 552 species; 2) a curated dataset of 32,129 mitochondrial COI sequences for 532 species, including a de novo reference library for the Maghreb (Morocco and northern Algeria and Tunisia) and Macaronesia (Azores, Madeira and Canary Islands); 3) seven indexes of intraspecific genetic variation (IGV): observed and expected number of haplotypes, haplotype and nucleotide diversity, two fixation indexes, and maximum p-distance; 4) species-level maps illustrating the distribution of COI variability and haplotype networks. The updated checklist will be fundamental for any application dealing with butterfly diversity in Western Palearctic. IGV indexes provide measures for genetic polymorphism and spatial structure and represent proxies for dispersal capacity. These resources will facilitate comparative studies of macrogenetics, will foster integrative taxonomy, and will aid conservation strategies.[Main types of variables contained] A complete species checklist in table format, 32,129 mitochondrial DNA-barcodes provided with metadata (species membership, WGS84 coordinates, sequence length), and a book in PDF format including the IGV atlas and indexes.[Spatial location and grain] The checklist encompasses Europe up to Urals in the east, north Macaronesia (Azores, Madeira and Canary Islands), as well as the Maghreb (Morocco and northern Algeria and Tunisia). DNA-barcodes have been retained in the geographic interval of -31.3–67.5 degrees of longitude and 27.5–71.2 degrees of latitude.[Time period and grain] DNA-barcodes originate from studies published between 1998-2022 and from de novo sequencing of 2,608 specimens done between 2007-2022.[Major taxa and level of measurement] Butterflies (Lepidoptera, Papilionoidea), analysed from individual to species level.[Software format] Data and functions to manage the dataset are provided in the iodatabase R package (https://github.com/leondap/iodatabase) and in Dryad.Funding provided by: Università degli Studi di Firenze. Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100004434Peer reviewedZenodoUniversità degli Studi di FirenzeDapporto, Leonardo [0000-0001-7129-4526]Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202320232022info:eu-repo/semantics/datasethttp://purl.org/coar/resource_type/c_ddb1text/x-r-syntaxhttp://hdl.handle.net/10261/311506reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)InglésDapporto, Leonardo; Menchetti, Mattia; Vodă, Raluca; Corbella, Cecilia; Cuvelier, Sylvain; Djemadi, Imed; Gascoigne-Pees, Martin; Hinojosa, Joan Carles; Ting Lam, Nok; Serracanta, Maria; Talavera, Gerard; Dincă, Vlad; Vila, Roger. The atlas of mitochondrial genetic diversity for Western Palaearctic butterflies. https://doi.org/10.1111/geb.13579 . http://hdl.handle.net/10261/281535Dapporto, Leonardo; 2022; The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Dataset]; Dryad; https://doi.org/10.5061/dryad.9w0vt4bjjDapporto, Leonardo; 2022; Integrated and Open Butterfly Database [Dataset]; GitHub; Version 1.0.1; https://github.com/leondap/iodatabase.githttps://doi.org/10.5281/zenodo.6841163Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3115062026-05-22T06:33:51Z
dc.title.none.fl_str_mv The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Software]
title The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Software]
spellingShingle The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Software]
Dapporto, Leonardo
title_short The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Software]
title_full The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Software]
title_fullStr The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Software]
title_full_unstemmed The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Software]
title_sort The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Software]
dc.creator.none.fl_str_mv Dapporto, Leonardo
author Dapporto, Leonardo
author_facet Dapporto, Leonardo
author_role author
dc.contributor.none.fl_str_mv Università degli Studi di Firenze
Dapporto, Leonardo [0000-0001-7129-4526]
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
description The dataset of the Atlas of mitochondrial genetic diversity for Western Palearctic butterflies (COI sequences and metadata) is available in the iodatabase R package available at https://github.com/leondap/iodatabase.-- Here the R script with a few supplementaty files is available in order to replicate the figures composing the Atlas.
publishDate 2022
dc.date.none.fl_str_mv 2022
2023
2023
dc.type.none.fl_str_mv info:eu-repo/semantics/dataset
http://purl.org/coar/resource_type/c_ddb1
format dataset
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/311506
url http://hdl.handle.net/10261/311506
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Dapporto, Leonardo; Menchetti, Mattia; Vodă, Raluca; Corbella, Cecilia; Cuvelier, Sylvain; Djemadi, Imed; Gascoigne-Pees, Martin; Hinojosa, Joan Carles; Ting Lam, Nok; Serracanta, Maria; Talavera, Gerard; Dincă, Vlad; Vila, Roger. The atlas of mitochondrial genetic diversity for Western Palaearctic butterflies. https://doi.org/10.1111/geb.13579 . http://hdl.handle.net/10261/281535
Dapporto, Leonardo; 2022; The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies [Dataset]; Dryad; https://doi.org/10.5061/dryad.9w0vt4bjj
Dapporto, Leonardo; 2022; Integrated and Open Butterfly Database [Dataset]; GitHub; Version 1.0.1; https://github.com/leondap/iodatabase.git
https://doi.org/10.5281/zenodo.6841163
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/x-r-syntax
dc.publisher.none.fl_str_mv Zenodo
publisher.none.fl_str_mv Zenodo
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15,81155

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