DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Schachtii group from the genus Heterodera (Tylenchida: Heteroderidae)

Cyst-forming nematodes of the genus Heterodera are highly derived and economically important plant parasites. The Schachtii group of this genus is one of the largest ones with a total of 18 species parasitising dicotyledons. In this study, we provided comprehensive phylogenetic analyses of several h...

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Autores: Subbotin, Sergei A., Roubtsova, Tatiana V., Bostock, Richard M., Tanha Maafi, Zahra, Chizhov, Vladimir N., Palomares Rius, Juan E., Castillo, Pablo
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2024
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/341978
Acceso en línea:http://hdl.handle.net/10261/341978
https://api.elsevier.com/content/abstract/scopus_id/85176258889
Access Level:acceso abierto
Palabra clave:Sino-Japanese Floristic Region
Biogeography
Heterodera betae
Heterodera glycines
Heterodera medicaginis
Heterodera schachtii
Mediterranean Basin biodiversity hotspot
Molecular clock
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spelling DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Schachtii group from the genus Heterodera (Tylenchida: Heteroderidae)Subbotin, Sergei A.Roubtsova, Tatiana V.Bostock, Richard M.Tanha Maafi, ZahraChizhov, Vladimir N.Palomares Rius, Juan E.Castillo, PabloSino-Japanese Floristic RegionBiogeographyHeterodera betaeHeterodera glycinesHeterodera medicaginisHeterodera schachtiiMediterranean Basin biodiversity hotspotMolecular clockCyst-forming nematodes of the genus Heterodera are highly derived and economically important plant parasites. The Schachtii group of this genus is one of the largest ones with a total of 18 species parasitising dicotyledons. In this study, we provided comprehensive phylogenetic analyses of several hundred COI and ITS rRNA gene sequences of selected species from the Schachtii group, including H. betae, H. cajani, H. ciceri, H. galeopsidis, H. glycines, H. medicaginis, H. mediterranea, H. schachtii, H. sonchophila and H. trifolii, using Bayesian inference, maximum likelihood, and statistical parsimony. One hundred and twenty four new COI, 57 ITS rRNA and eight hsp90 gene sequences from 81 nematode populations collected in 19 countries were obtained in this study. Our study showed that the ITS rRNA gene has limited discrimination power compared to the COI gene. However, our analysis also revealed that partial COI gene sequences were identical for H. trifolii, H. betae and H. galeopsidis. Based on the results of phylogeographical analysis and age estimation of clades with a molecular clock approach, it was hypothesised that the majority of the Schachtii group species originated and diversified in the Mediterranean Basin biodiversity hotspot during the Pleistocene and then dispersed from this region across the world. The Sino-Japanese Floristic Region is likely one of the centres of diversification for the soybean cyst nematode, which showed distinct population structure. The possible role of hybridisation and polyploidisation in the evolution of species of the Schachtii group is discussed.This work was sponsored by USDA APHIS Farm Bill grants: AP18PPQS&T00C201/18-0430-000-FR and AP20PPQS&T00C078/20-0256-000-FR.Peer reviewedBrillDepartment of Agriculture (US)Palomares Rius, Juan E. [0000-0003-1776-8131]Castillo, Pablo [0000-0003-0256-876X]Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202420242024info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/pdfhttp://hdl.handle.net/10261/341978https://api.elsevier.com/content/abstract/scopus_id/85176258889reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Ingléshttps://doi.org/10.1163/15685411-bja10292Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3419782026-05-22T06:33:51Z
dc.title.none.fl_str_mv DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Schachtii group from the genus Heterodera (Tylenchida: Heteroderidae)
title DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Schachtii group from the genus Heterodera (Tylenchida: Heteroderidae)
spellingShingle DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Schachtii group from the genus Heterodera (Tylenchida: Heteroderidae)
Subbotin, Sergei A.
Sino-Japanese Floristic Region
Biogeography
Heterodera betae
Heterodera glycines
Heterodera medicaginis
Heterodera schachtii
Mediterranean Basin biodiversity hotspot
Molecular clock
title_short DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Schachtii group from the genus Heterodera (Tylenchida: Heteroderidae)
title_full DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Schachtii group from the genus Heterodera (Tylenchida: Heteroderidae)
title_fullStr DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Schachtii group from the genus Heterodera (Tylenchida: Heteroderidae)
title_full_unstemmed DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Schachtii group from the genus Heterodera (Tylenchida: Heteroderidae)
title_sort DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Schachtii group from the genus Heterodera (Tylenchida: Heteroderidae)
dc.creator.none.fl_str_mv Subbotin, Sergei A.
Roubtsova, Tatiana V.
Bostock, Richard M.
Tanha Maafi, Zahra
Chizhov, Vladimir N.
Palomares Rius, Juan E.
Castillo, Pablo
author Subbotin, Sergei A.
author_facet Subbotin, Sergei A.
Roubtsova, Tatiana V.
Bostock, Richard M.
Tanha Maafi, Zahra
Chizhov, Vladimir N.
Palomares Rius, Juan E.
Castillo, Pablo
author_role author
author2 Roubtsova, Tatiana V.
Bostock, Richard M.
Tanha Maafi, Zahra
Chizhov, Vladimir N.
Palomares Rius, Juan E.
Castillo, Pablo
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Department of Agriculture (US)
Palomares Rius, Juan E. [0000-0003-1776-8131]
Castillo, Pablo [0000-0003-0256-876X]
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Sino-Japanese Floristic Region
Biogeography
Heterodera betae
Heterodera glycines
Heterodera medicaginis
Heterodera schachtii
Mediterranean Basin biodiversity hotspot
Molecular clock
topic Sino-Japanese Floristic Region
Biogeography
Heterodera betae
Heterodera glycines
Heterodera medicaginis
Heterodera schachtii
Mediterranean Basin biodiversity hotspot
Molecular clock
description Cyst-forming nematodes of the genus Heterodera are highly derived and economically important plant parasites. The Schachtii group of this genus is one of the largest ones with a total of 18 species parasitising dicotyledons. In this study, we provided comprehensive phylogenetic analyses of several hundred COI and ITS rRNA gene sequences of selected species from the Schachtii group, including H. betae, H. cajani, H. ciceri, H. galeopsidis, H. glycines, H. medicaginis, H. mediterranea, H. schachtii, H. sonchophila and H. trifolii, using Bayesian inference, maximum likelihood, and statistical parsimony. One hundred and twenty four new COI, 57 ITS rRNA and eight hsp90 gene sequences from 81 nematode populations collected in 19 countries were obtained in this study. Our study showed that the ITS rRNA gene has limited discrimination power compared to the COI gene. However, our analysis also revealed that partial COI gene sequences were identical for H. trifolii, H. betae and H. galeopsidis. Based on the results of phylogeographical analysis and age estimation of clades with a molecular clock approach, it was hypothesised that the majority of the Schachtii group species originated and diversified in the Mediterranean Basin biodiversity hotspot during the Pleistocene and then dispersed from this region across the world. The Sino-Japanese Floristic Region is likely one of the centres of diversification for the soybean cyst nematode, which showed distinct population structure. The possible role of hybridisation and polyploidisation in the evolution of species of the Schachtii group is discussed.
publishDate 2024
dc.date.none.fl_str_mv 2024
2024
2024
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
Publisher's version
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/341978
https://api.elsevier.com/content/abstract/scopus_id/85176258889
url http://hdl.handle.net/10261/341978
https://api.elsevier.com/content/abstract/scopus_id/85176258889
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv https://doi.org/10.1163/15685411-bja10292
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Brill
publisher.none.fl_str_mv Brill
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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