CRISPR-Mediated Strand Displacement Logic Circuits with Toehold-Free DNA

[EN] DNA nanotechnology, and DNA computing in particular, has grown extensively over the past decade to end with a variety of functional stable structures and dynamic circuits. However, the use as designer elements of regular DNA pieces, perfectly complementary double strands, has remained elusive....

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Bibliographic Details
Authors: Montagud-Martínez, Roser, Heras-Hernández, María, Goiriz, Lucas, Rodrigo Tarrega, Guillermo, Daròs, José-Antonio|||0000-0002-6535-2889
Format: article
Publication Date:2021
Country:España
Institution:Universitat Politècnica de València (UPV)
Repository:RiuNet. Repositorio Institucional de la Universitat Politécnica de Valéncia
Language:English
OAI Identifier:oai:riunet.upv.es:10251/182448
Online Access:https://riunet.upv.es/handle/10251/182448
Access Level:Open access
Keyword:Biological computing
DNA nanotechnology
Synthetic biology
Description
Summary:[EN] DNA nanotechnology, and DNA computing in particular, has grown extensively over the past decade to end with a variety of functional stable structures and dynamic circuits. However, the use as designer elements of regular DNA pieces, perfectly complementary double strands, has remained elusive. Here, we report the exploitation of CRISPR-Cas systems to engineer logic circuits based on isothermal strand displacement that perform with toehold-free double-stranded DNA. We designed and implemented molecular converters for signal detection and amplification, showing good interoperability between enzymatic and nonenzymatic processes. Overall, these results contribute to enlarge the repertoire of substrates and reactions (hardware) for DNA computing.