Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host

Financiación de acceso abierto proporcionada por los Fondos Europeos FEDER y la Junta de Castilla y León en el marco de la Estrategia de Investigación e Innovación para la Especialización Inteligente (RIS3) de Castilla y León 2021-2027

Detalles Bibliográficos
Autores: Saati Santamaría, Zaki, Flores Félix, José David, Igual, José M., Velázquez Pérez, María Encarnación, García Fraile, Paula, Martínez Molina, Eustoquio, Saati-Santamaría, Zaki, Flores-Félix, José David, Velázquez, Encarna, García-Fraile, Paula, Martínez-Molina, Eustoquio
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2024
País:España
Institución:Universidad de Salamanca (USAL)
Repositorio:GREDOS. Repositorio Institucional de la Universidad de Salamanca
OAI Identifier:oai:gredos.usal.es:10366/166707
Acceso en línea:http://hdl.handle.net/10366/166707
Access Level:acceso abierto
Palabra clave:Speciation
Ferdinandcohnia quinoae
Quinoa
Adaptation
Comparative genomics
Microbial ecology
Genomics
3309.90 Microbiología de Alimentos
2302.04 Genética Bioquímica
genómica
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network_acronym_str ES
network_name_str España
repository_id_str
spelling Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant HostSaati Santamaría, ZakiFlores Félix, José DavidIgual, José M.Velázquez Pérez, María EncarnaciónGarcía Fraile, PaulaMartínez Molina, EustoquioSaati-Santamaría, ZakiFlores-Félix, José DavidVelázquez, EncarnaGarcía-Fraile, PaulaMartínez-Molina, EustoquioSpeciationFerdinandcohnia quinoaeQuinoaAdaptationComparative genomicsMicrobial ecologyGenomics3309.90 Microbiología de Alimentos2302.04 Genética BioquímicagenómicaFinanciación de acceso abierto proporcionada por los Fondos Europeos FEDER y la Junta de Castilla y León en el marco de la Estrategia de Investigación e Innovación para la Especialización Inteligente (RIS3) de Castilla y León 2021-2027[EN] The bacterial strain SECRCQ15T was isolated from seeds of Chenopodium quinoa in Spain. Phylogenetic, chemotaxonomic, and phenotypic analyses, as well as genome similarity indices, support the classification of the strain into a novel species of the genus Ferdinandcohnia, for which we propose the name Ferdinandcohnia quinoae sp. nov. To dig deep into the speciation features of the strain SECRCQ15T, we performed a comparative genomic analysis of the genome of this strain and those of the type strains of species from the genus Ferdinandcohnia. We found several genes related with plant growth-promoting mechanisms within the SECRCQ15T genome. We also found that singletons of F. quinoae SECRCQ15T are mainly related to the use of carbohydrates, which is a common trait of plant-associated bacteria. To further reveal speciation events in this strain, we revealed genes undergoing diversifying selection (e.g., genes encoding ribosomal proteins) and functions likely lost due to pseudogenization. Also, we found that this novel species contains 138 plant-associated gene-cluster functions that are unique within the genus Ferdinandcohnia. These features may explain both the ecological and taxonomical differentiation of this new taxon.CRUE-CSIC Junta de Castilla y LeónSpringer202520252024info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://hdl.handle.net/10366/166707reponame:GREDOS. Repositorio Institucional de la Universidad de Salamancainstname:Universidad de Salamanca (USAL)InglésSA293P18Attribution-NonCommercial-NoDerivatives 4.0 Internacionalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessoai:gredos.usal.es:10366/1667072026-06-07T06:28:51Z
dc.title.none.fl_str_mv Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host
title Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host
spellingShingle Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host
Saati Santamaría, Zaki
Speciation
Ferdinandcohnia quinoae
Quinoa
Adaptation
Comparative genomics
Microbial ecology
Genomics
3309.90 Microbiología de Alimentos
2302.04 Genética Bioquímica
genómica
title_short Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host
title_full Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host
title_fullStr Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host
title_full_unstemmed Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host
title_sort Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host
dc.creator.none.fl_str_mv Saati Santamaría, Zaki
Flores Félix, José David
Igual, José M.
Velázquez Pérez, María Encarnación
García Fraile, Paula
Martínez Molina, Eustoquio
Saati-Santamaría, Zaki
Flores-Félix, José David
Velázquez, Encarna
García-Fraile, Paula
Martínez-Molina, Eustoquio
author Saati Santamaría, Zaki
author_facet Saati Santamaría, Zaki
Flores Félix, José David
Igual, José M.
Velázquez Pérez, María Encarnación
García Fraile, Paula
Martínez Molina, Eustoquio
Saati-Santamaría, Zaki
Flores-Félix, José David
Velázquez, Encarna
García-Fraile, Paula
Martínez-Molina, Eustoquio
author_role author
author2 Flores Félix, José David
Igual, José M.
Velázquez Pérez, María Encarnación
García Fraile, Paula
Martínez Molina, Eustoquio
Saati-Santamaría, Zaki
Flores-Félix, José David
Velázquez, Encarna
García-Fraile, Paula
Martínez-Molina, Eustoquio
author2_role author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Speciation
Ferdinandcohnia quinoae
Quinoa
Adaptation
Comparative genomics
Microbial ecology
Genomics
3309.90 Microbiología de Alimentos
2302.04 Genética Bioquímica
genómica
topic Speciation
Ferdinandcohnia quinoae
Quinoa
Adaptation
Comparative genomics
Microbial ecology
Genomics
3309.90 Microbiología de Alimentos
2302.04 Genética Bioquímica
genómica
description Financiación de acceso abierto proporcionada por los Fondos Europeos FEDER y la Junta de Castilla y León en el marco de la Estrategia de Investigación e Innovación para la Especialización Inteligente (RIS3) de Castilla y León 2021-2027
publishDate 2024
dc.date.none.fl_str_mv 2024
2025
2025
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10366/166707
url http://hdl.handle.net/10366/166707
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv SA293P18
dc.rights.none.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 Internacional
http://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 Internacional
http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv reponame:GREDOS. Repositorio Institucional de la Universidad de Salamanca
instname:Universidad de Salamanca (USAL)
instname_str Universidad de Salamanca (USAL)
reponame_str GREDOS. Repositorio Institucional de la Universidad de Salamanca
collection GREDOS. Repositorio Institucional de la Universidad de Salamanca
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15,811543

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