CleanBar: A versatile demultiplexing tool for split-and-pool barcoding in single-cell omics

Data availability: The sequencing data are available at NCBI with BioProject ID: PRJNA1199928. The CleanBar program source code and test files coming from the same sequence dataset are available at the GitHub repository https://github.com/tbcgit/cleanbar The complete FASTQ outputs of the CleanBar pr...

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Detalles Bibliográficos
Autores: Arnau, Vicente, Ortiz-Maiques, Alicia, Valero Tebar, Juan, Mora-Quilis, Lucas, Kurmauskaite, Vaida, Campos Dopazo, Lorea, Domingo-Calap, Pilar, Džunková, Mária
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2025
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/404950
Acceso en línea:http://hdl.handle.net/10261/404950
Access Level:acceso abierto
Descripción
Sumario:Data availability: The sequencing data are available at NCBI with BioProject ID: PRJNA1199928. The CleanBar program source code and test files coming from the same sequence dataset are available at the GitHub repository https://github.com/tbcgit/cleanbar The complete FASTQ outputs of the CleanBar program (individual FASTQ files containing 4 barcodes and the FASTQ files with 2 or 3 barcodes), as well as the R script for generating raw figures with the corresponding source files are available for download from the repository of University of Valencia https://nuvol.uv.es/owncloud/index.php/s/pSpjXkmx7EW8Oum