Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history

J.F. de Jong et al.

Detalles Bibliográficos
Autores: Jong, Joost F. de, Iacolina, Laura, Vicente, Joaquín, Fonseca, Carlos, Lizana, Víctor, Podgórski, Tomasz, Megens, Hendrik-Jan
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2023
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/334384
Acceso en línea:http://hdl.handle.net/10261/334384
Access Level:acceso abierto
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spelling Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic historyJong, Joost F. deIacolina, LauraVicente, JoaquínFonseca, CarlosLizana, VíctorPodgórski, TomaszMegens, Hendrik-JanJ.F. de Jong et al.European wildlife has been subjected to intensifying levels of anthropogenic impact throughout the Holocene, yet the main genetic partitioning of many species is thought to still reflect the late-Pleistocene glacial refugia. We analyzed 26,342 nuclear SNPs of 464 wild boar (Sus scrofa) across the European continent to infer demographic history and reassess the genetic consequences of natural and anthropogenic forces. We found that population fragmentation, inbreeding and recent hybridization with domestic pigs have caused the spatial genetic structure to be heterogeneous at the local scale. Underlying local anthropogenic signatures, we found a deep genetic structure in the form of an arch-shaped cline extending from the Dinaric Alps, via Southeastern Europe and the Baltic states, to Western Europe and, finally, to the genetically diverged Iberian peninsula. These findings indicate that, despite considerable anthropogenic influence, the deeper, natural continental structure is still intact. Regarding the glacial refugia, our findings show a weaker signal than generally assumed, but are nevertheless suggestive of two main recolonization routes, with important roles for Southern France and the Balkans. Our results highlight the importance of applying genomic resources and framing genetic results within a species' demographic history and geographic distribution for a better understanding of the complex mixture of underlying processes.This study was financially supported by ‘Stichting De Eik’ and ‘De Koninklijke Nederlandse Jagersvereniging’. The collection of samples from Russia was supported by The Russian Ministry of Science and Higher Education (Project No. AAAA-A19-119022190168-8). LI received funding from the Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Action (Grant Agreement no. 656697). BP acknowledges the financial support from the Ministry of Agriculture, Forestry and Food of the Republic of Slovenia and the Slovenian Research Agency (project V4–1825; programme group P4–0107). NŠ acknowledges the financial support by the Croatian Science Foundation, project IP 2019-04-4096 “The role of hunting related activities in the range expansion of recently established wild ungulate populations in the Mediterranean”. CF and EF are thankful to FCT/MCTES, for financial support to CESAM (UIDP/50017/2020+UIDB/50017/2020), through Portuguese national funds.Peer reviewedSpringer NatureMinistry of Science and Higher Education of the Russian FederationEuropean CommissionSlovenian Research AgencyMinistry of Agriculture, Forestry and Food (Slovenia)Croatian Science FoundationFundação para a Ciência e a Tecnologia (Portugal)Ministério da Ciência, Tecnologia e Ensino Superior (Portugal)Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202320232023info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/pdfhttp://hdl.handle.net/10261/334384reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/EC/H2020/656697The underlying dataset has been published as supplementary material of the article in the publisher platform at DOI 10.5061/dryad.1rn8pk0z6https://doi.org/10.1038/s41437-022-00587-1Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3343842026-05-22T06:33:51Z
dc.title.none.fl_str_mv Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history
title Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history
spellingShingle Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history
Jong, Joost F. de
title_short Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history
title_full Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history
title_fullStr Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history
title_full_unstemmed Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history
title_sort Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history
dc.creator.none.fl_str_mv Jong, Joost F. de
Iacolina, Laura
Vicente, Joaquín
Fonseca, Carlos
Lizana, Víctor
Podgórski, Tomasz
Megens, Hendrik-Jan
author Jong, Joost F. de
author_facet Jong, Joost F. de
Iacolina, Laura
Vicente, Joaquín
Fonseca, Carlos
Lizana, Víctor
Podgórski, Tomasz
Megens, Hendrik-Jan
author_role author
author2 Iacolina, Laura
Vicente, Joaquín
Fonseca, Carlos
Lizana, Víctor
Podgórski, Tomasz
Megens, Hendrik-Jan
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Ministry of Science and Higher Education of the Russian Federation
European Commission
Slovenian Research Agency
Ministry of Agriculture, Forestry and Food (Slovenia)
Croatian Science Foundation
Fundação para a Ciência e a Tecnologia (Portugal)
Ministério da Ciência, Tecnologia e Ensino Superior (Portugal)
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
description J.F. de Jong et al.
publishDate 2023
dc.date.none.fl_str_mv 2023
2023
2023
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
Publisher's version
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/334384
url http://hdl.handle.net/10261/334384
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv #PLACEHOLDER_PARENT_METADATA_VALUE#
info:eu-repo/grantAgreement/EC/H2020/656697
The underlying dataset has been published as supplementary material of the article in the publisher platform at DOI 10.5061/dryad.1rn8pk0z6
https://doi.org/10.1038/s41437-022-00587-1
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Springer Nature
publisher.none.fl_str_mv Springer Nature
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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