Speciation features of Ferdinandcohnia quinoae sp. nov to adapt to the plant host

12 páginas, 4 figuras, 2 tablas

Detalles Bibliográficos
Autores: Saati-Santamaría, Zaki, Flores-Félix, José David, Igual, José Mariano, Velázquez, Encarna, García-Fraile, Paula, Martínez-Molina, Eustoquio
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2024
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/355736
Acceso en línea:http://hdl.handle.net/10261/355736
https://api.elsevier.com/content/abstract/scopus_id/85188101101
Access Level:acceso abierto
Palabra clave:Ferdinandcohnia quinoae
Adaptation
Comparative genomics
Microbial ecology
Quinoa
Speciation
adaptation
comparative genomics
microbial ecology
quinoa
speciation
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spelling Speciation features of Ferdinandcohnia quinoae sp. nov to adapt to the plant hostSaati-Santamaría, ZakiFlores-Félix, José DavidIgual, José MarianoVelázquez, EncarnaGarcía-Fraile, PaulaMartínez-Molina, EustoquioFerdinandcohnia quinoaeAdaptationComparative genomicsMicrobial ecologyQuinoaSpeciationadaptationcomparative genomicsmicrobial ecologyquinoaspeciation12 páginas, 4 figuras, 2 tablasThe bacterial strain SECRCQ15T was isolated from seeds of Chenopodium quinoa in Spain. Phylogenetic, chemotaxonomic, and phenotypic analyses, as well as genome similarity indices, support the classification of the strain into a novel species of the genus Ferdinandcohnia, for which we propose the name Ferdinandcohnia quinoae sp. nov. To dig deep into the speciation features of the strain SECRCQ15T, we performed a comparative genomic analysis of the genome of this strain and those of the type strains of species from the genus Ferdinandcohnia. We found several genes related with plant growth-promoting mechanisms within the SECRCQ15T genome. We also found that singletons of F. quinoae SECRCQ15T are mainly related to the use of carbohydrates, which is a common trait of plant-associated bacteria. To further reveal speciation events in this strain, we revealed genes undergoing diversifying selection (e.g., genes encoding ribosomal proteins) and functions likely lost due to pseudogenization. Also, we found that this novel species contains 138 plant-associated gene-cluster functions that are unique within the genus Ferdinandcohnia. These features may explain both the ecological and taxonomical differentiation of this new taxon.The authors thank the Strategic Research Programs for Units of Excellence from Junta de Castilla y León (Escalera de Excelencia CLU-2O18-04 and CLU-2019-05) co-funded by the Junta de Castilla y León and European Union (ERDF “Europe drives our growth”). ZSS acknowledge a Grant cofinanced by the European NextGenerationEU, Spanish “Plan de Recuperación, Transformación y Resiliencia”, Spanish Ministry of Universities, and University of Salamanca (“Ayudas para la recualificación del sistema universitario español 2021–2022”). JDFF acknowledge of a postdoctoral fellowshing funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 101034371.Peer reviewedSpringerEuropean CommissionJunta de Castilla y LeónIgual, José Mariano [0000-0002-5080-0378]Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202420242024info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionhttp://hdl.handle.net/10261/355736https://api.elsevier.com/content/abstract/scopus_id/85188101101reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)InglésJournal of molecular evolutionhttp://dx.doi.org/10.1007/s00239-024-10164-1Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3557362026-05-22T06:33:51Z
dc.title.none.fl_str_mv Speciation features of Ferdinandcohnia quinoae sp. nov to adapt to the plant host
title Speciation features of Ferdinandcohnia quinoae sp. nov to adapt to the plant host
spellingShingle Speciation features of Ferdinandcohnia quinoae sp. nov to adapt to the plant host
Saati-Santamaría, Zaki
Ferdinandcohnia quinoae
Adaptation
Comparative genomics
Microbial ecology
Quinoa
Speciation
adaptation
comparative genomics
microbial ecology
quinoa
speciation
title_short Speciation features of Ferdinandcohnia quinoae sp. nov to adapt to the plant host
title_full Speciation features of Ferdinandcohnia quinoae sp. nov to adapt to the plant host
title_fullStr Speciation features of Ferdinandcohnia quinoae sp. nov to adapt to the plant host
title_full_unstemmed Speciation features of Ferdinandcohnia quinoae sp. nov to adapt to the plant host
title_sort Speciation features of Ferdinandcohnia quinoae sp. nov to adapt to the plant host
dc.creator.none.fl_str_mv Saati-Santamaría, Zaki
Flores-Félix, José David
Igual, José Mariano
Velázquez, Encarna
García-Fraile, Paula
Martínez-Molina, Eustoquio
author Saati-Santamaría, Zaki
author_facet Saati-Santamaría, Zaki
Flores-Félix, José David
Igual, José Mariano
Velázquez, Encarna
García-Fraile, Paula
Martínez-Molina, Eustoquio
author_role author
author2 Flores-Félix, José David
Igual, José Mariano
Velázquez, Encarna
García-Fraile, Paula
Martínez-Molina, Eustoquio
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv European Commission
Junta de Castilla y León
Igual, José Mariano [0000-0002-5080-0378]
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Ferdinandcohnia quinoae
Adaptation
Comparative genomics
Microbial ecology
Quinoa
Speciation
adaptation
comparative genomics
microbial ecology
quinoa
speciation
topic Ferdinandcohnia quinoae
Adaptation
Comparative genomics
Microbial ecology
Quinoa
Speciation
adaptation
comparative genomics
microbial ecology
quinoa
speciation
description 12 páginas, 4 figuras, 2 tablas
publishDate 2024
dc.date.none.fl_str_mv 2024
2024
2024
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
Publisher's version
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/355736
https://api.elsevier.com/content/abstract/scopus_id/85188101101
url http://hdl.handle.net/10261/355736
https://api.elsevier.com/content/abstract/scopus_id/85188101101
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Journal of molecular evolution
http://dx.doi.org/10.1007/s00239-024-10164-1
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15,811543

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