Advances in xmipp for cryo-electron microscopy: From xmipp to scipion

Xmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National Center for Biotechnology, although with contributions from many other devel...

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Detalhes bibliográficos
Autores: Strelak, David, Jiménez-Moreno, Amaya, Vilas, José L., Ramírez-Aportela, Erney, Sánchez-García, Rubén, Maluenda Niubó, David
Formato: artículo
Estado:Versión publicada
Fecha de publicación:2021
País:España
Recursos:Universidad de Barcelona
Repositorio:Dipòsit Digital de la UB
OAI Identifier:oai:diposit.ub.edu:2445/184043
Acesso em linha:https://hdl.handle.net/2445/184043
Access Level:acceso abierto
Palavra-chave:Processament d'imatges
Microscòpia electrònica de transmissió
Tomografia
Image processing
Transmission electron microscopy
Tomography
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spelling Advances in xmipp for cryo-electron microscopy: From xmipp to scipionStrelak, DavidJiménez-Moreno, AmayaVilas, José L.Ramírez-Aportela, ErneySánchez-García, RubénMaluenda Niubó, DavidProcessament d'imatgesMicroscòpia electrònica de transmissióTomografiaImage processingTransmission electron microscopyTomographyXmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National Center for Biotechnology, although with contributions from many other developers over the world. During its 25 years of existence, Xmipp underwent multiple changes and updates. While there were many publications related to new programs and functionality added to Xmipp, there is no single publication on the Xmipp as a package since 2013. In this article, we give an overview of the changes and new work since 2013, describe technologies and techniques used during the development, and take a peek at the future of the package.MDPI2021info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://hdl.handle.net/2445/184043Articles publicats en revistes (Física Aplicada)reponame:Dipòsit Digital de la UBinstname:Universidad de BarcelonaInglésReproducció del document publicat a: https://doi.org/10.3390/molecules26206224Molecules, 2021, vol. 26, num. 20, p. 6224https://doi.org/10.3390/molecules26206224info:eu-repo/grantAgreement/EC/H2020/871037info:eu-repo/grantAgreement/EC/H2020/824087cc-by (c) Strelak, D. et al., 2021https://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessoai:diposit.ub.edu:2445/1840432026-05-27T06:46:51Z
dc.title.none.fl_str_mv Advances in xmipp for cryo-electron microscopy: From xmipp to scipion
title Advances in xmipp for cryo-electron microscopy: From xmipp to scipion
spellingShingle Advances in xmipp for cryo-electron microscopy: From xmipp to scipion
Strelak, David
Processament d'imatges
Microscòpia electrònica de transmissió
Tomografia
Image processing
Transmission electron microscopy
Tomography
title_short Advances in xmipp for cryo-electron microscopy: From xmipp to scipion
title_full Advances in xmipp for cryo-electron microscopy: From xmipp to scipion
title_fullStr Advances in xmipp for cryo-electron microscopy: From xmipp to scipion
title_full_unstemmed Advances in xmipp for cryo-electron microscopy: From xmipp to scipion
title_sort Advances in xmipp for cryo-electron microscopy: From xmipp to scipion
dc.creator.none.fl_str_mv Strelak, David
Jiménez-Moreno, Amaya
Vilas, José L.
Ramírez-Aportela, Erney
Sánchez-García, Rubén
Maluenda Niubó, David
author Strelak, David
author_facet Strelak, David
Jiménez-Moreno, Amaya
Vilas, José L.
Ramírez-Aportela, Erney
Sánchez-García, Rubén
Maluenda Niubó, David
author_role author
author2 Jiménez-Moreno, Amaya
Vilas, José L.
Ramírez-Aportela, Erney
Sánchez-García, Rubén
Maluenda Niubó, David
author2_role author
author
author
author
author
dc.subject.none.fl_str_mv Processament d'imatges
Microscòpia electrònica de transmissió
Tomografia
Image processing
Transmission electron microscopy
Tomography
topic Processament d'imatges
Microscòpia electrònica de transmissió
Tomografia
Image processing
Transmission electron microscopy
Tomography
description Xmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National Center for Biotechnology, although with contributions from many other developers over the world. During its 25 years of existence, Xmipp underwent multiple changes and updates. While there were many publications related to new programs and functionality added to Xmipp, there is no single publication on the Xmipp as a package since 2013. In this article, we give an overview of the changes and new work since 2013, describe technologies and techniques used during the development, and take a peek at the future of the package.
publishDate 2021
dc.date.none.fl_str_mv 2021
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://hdl.handle.net/2445/184043
url https://hdl.handle.net/2445/184043
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Reproducció del document publicat a: https://doi.org/10.3390/molecules26206224
Molecules, 2021, vol. 26, num. 20, p. 6224
https://doi.org/10.3390/molecules26206224
info:eu-repo/grantAgreement/EC/H2020/871037
info:eu-repo/grantAgreement/EC/H2020/824087
dc.rights.none.fl_str_mv cc-by (c) Strelak, D. et al., 2021
https://creativecommons.org/licenses/by/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv cc-by (c) Strelak, D. et al., 2021
https://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv Articles publicats en revistes (Física Aplicada)
reponame:Dipòsit Digital de la UB
instname:Universidad de Barcelona
instname_str Universidad de Barcelona
reponame_str Dipòsit Digital de la UB
collection Dipòsit Digital de la UB
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15.300719

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