Cautionary notes on the use of co-occurrence networks in soil ecology

10 Pág..

Detalhes bibliográficos
Autores: Goberna, Marta, Verdú, Miguel
Formato: artículo
Estado:Versión publicada
Fecha de publicación:2022
País:España
Recursos:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/273211
Acesso em linha:http://hdl.handle.net/10261/273211
https://api.elsevier.com/content/abstract/scopus_id/85122618823
Access Level:acceso abierto
Palavra-chave:Co-occurrence patterns
Ecological interactions
Keystone taxa
Microbial networks
Network analysis
Soil microbiome
id ES_ae1cfe4fd62b3f4d2dbd5abc24ebe964
oai_identifier_str oai:digital.csic.es:10261/273211
network_acronym_str ES
network_name_str España
repository_id_str
spelling Cautionary notes on the use of co-occurrence networks in soil ecologyGoberna, MartaVerdú, MiguelCo-occurrence patternsEcological interactionsKeystone taxaMicrobial networksNetwork analysisSoil microbiome10 Pág..Soil ecology is witnessing exponential growth in the number of studies using co-occurrence network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or genes across soil samples at a wide range of geographic scales - from single aggregates to the whole planet - and taxonomic scopes, some studies targeting specific taxa or guilds to others surveying the whole microbiome as well as micro- and mesofauna. Co-occurrence networks can be very useful to extract simple patterns from complex datasets. Applications include the detection of abiotic and biotic factors that determine community structure, the identification of keystone taxa and their relationship to specific soil functions, and the inference of mechanisms of community assembly. However, networks are more and more often misused and serve as mere graphic tools with no attempt at hypothesis testing. In this perspectives article, we first review the main usage of co-occurrence network analysis in soil ecology during the last decade. We then discuss the applications and caveats of network analysis in soil ecology, leaving apart strictly methodological aspects of network reconstruction, which is beyond the focus of this article. Finally, we include recommendation guidelines – such as the possibility of informing networks with geographic, environmental and/or phylogenetic information – with the hope that this will facilitate network analysis to become a useful tool that helps elucidate meaningful patterns in soil ecology.The authors received grants CGL2017-8975-R and PID2020-119634GB-I00 funded by MCIN/AEI/10.13039/501100011033 and by “ERDF A way of making Europe”.Peer reviewedElsevierAgencia Estatal de Investigación (España)Ministerio de Ciencia e Innovación (España)Goberna, M. [0000-0001-5303-3429]Verdú, Miguel [0000-0002-9778-7692]Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202220222022info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/pdfhttp://hdl.handle.net/10261/273211https://api.elsevier.com/content/abstract/scopus_id/85122618823reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/MICIN//CGL2017-8975-Rinfo:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-119634GB-I00Soil Biology and Biochemistryhttps://doi.org/10.1016/j.soilbio.2021.108534Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/2732112026-05-22T06:33:51Z
dc.title.none.fl_str_mv Cautionary notes on the use of co-occurrence networks in soil ecology
title Cautionary notes on the use of co-occurrence networks in soil ecology
spellingShingle Cautionary notes on the use of co-occurrence networks in soil ecology
Goberna, Marta
Co-occurrence patterns
Ecological interactions
Keystone taxa
Microbial networks
Network analysis
Soil microbiome
title_short Cautionary notes on the use of co-occurrence networks in soil ecology
title_full Cautionary notes on the use of co-occurrence networks in soil ecology
title_fullStr Cautionary notes on the use of co-occurrence networks in soil ecology
title_full_unstemmed Cautionary notes on the use of co-occurrence networks in soil ecology
title_sort Cautionary notes on the use of co-occurrence networks in soil ecology
dc.creator.none.fl_str_mv Goberna, Marta
Verdú, Miguel
author Goberna, Marta
author_facet Goberna, Marta
Verdú, Miguel
author_role author
author2 Verdú, Miguel
author2_role author
dc.contributor.none.fl_str_mv Agencia Estatal de Investigación (España)
Ministerio de Ciencia e Innovación (España)
Goberna, M. [0000-0001-5303-3429]
Verdú, Miguel [0000-0002-9778-7692]
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Co-occurrence patterns
Ecological interactions
Keystone taxa
Microbial networks
Network analysis
Soil microbiome
topic Co-occurrence patterns
Ecological interactions
Keystone taxa
Microbial networks
Network analysis
Soil microbiome
description 10 Pág..
publishDate 2022
dc.date.none.fl_str_mv 2022
2022
2022
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
Publisher's version
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/273211
https://api.elsevier.com/content/abstract/scopus_id/85122618823
url http://hdl.handle.net/10261/273211
https://api.elsevier.com/content/abstract/scopus_id/85122618823
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv #PLACEHOLDER_PARENT_METADATA_VALUE#
#PLACEHOLDER_PARENT_METADATA_VALUE#
info:eu-repo/grantAgreement/MICIN//CGL2017-8975-R
info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-119634GB-I00
Soil Biology and Biochemistry
https://doi.org/10.1016/j.soilbio.2021.108534
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
_version_ 1869416534173024256
score 15.812429

Registos relacionados