Advances in Xmipp for cryo-electron microscopy: from Xmipp to Scipion

Xmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National Center for Biotechnology, although with contributions from many other devel...

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Autores: Strelak, David, Jiménez Moreno, Amaya, Vilas, José Luis, Ramírez Aportela, Erney, Sánchez García, Rubén, Maluenda, David, Vargas Balbuena, Javier, Herreros, David, Fernández Giménez, Estrella, Isidro Gómez, Federico P. de, Horacek, Jan, Myska, David, Horacek, Martin, Conesa, Pablo, Fonseca-Reyna, Yunior C., Jiménez, Jorge, Martínez, Marta, Harastani, Mohamad, Jonic, Slavica, Filipovic, Jiri, Marabini, Roberto, Carazo, José María, Sorzano, Carlos O. S
Formato: artículo
Fecha de publicación:2021
País:España
Recursos:Universidad Complutense de Madrid (UCM)
Repositorio:Docta Complutense
Idioma:inglés
OAI Identifier:oai:docta.ucm.es:20.500.14352/4551
Acesso em linha:https://hdl.handle.net/20.500.14352/4551
Access Level:acceso abierto
Palavra-chave:535
Single-particle analysis
Local resolution
Quality assessment
Reconstruction
Alignment
Software
Accurate
Protein
3dem
Integration
Óptica (Física)
2209.19 Óptica Física
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oai_identifier_str oai:docta.ucm.es:20.500.14352/4551
network_acronym_str ES
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repository_id_str
spelling Advances in Xmipp for cryo-electron microscopy: from Xmipp to ScipionStrelak, DavidJiménez Moreno, AmayaVilas, José LuisRamírez Aportela, ErneySánchez García, RubénMaluenda, DavidVargas Balbuena, JavierHerreros, DavidFernández Giménez, EstrellaIsidro Gómez, Federico P. deHoracek, JanMyska, DavidHoracek, MartinConesa, PabloFonseca-Reyna, Yunior C.Jiménez, JorgeMartínez, MartaHarastani, MohamadJonic, SlavicaFilipovic, JiriMarabini, RobertoCarazo, José MaríaSorzano, Carlos O. S535Single-particle analysisLocal resolutionQuality assessmentReconstructionAlignmentSoftwareAccurateProtein3demIntegrationÓptica (Física)2209.19 Óptica FísicaXmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National Center for Biotechnology, although with contributions from many other developers over the world. During its 25 years of existence, Xmipp underwent multiple changes and updates. While there were many publications related to new programs and functionality added to Xmipp, there is no single publication on the Xmipp as a package since 2013. In this article, we give an overview of the changes and new work since 2013, describe technologies and techniques used during the development, and take a peek at the future of the package.MDPIUniversidad Complutense de Madrid20212021-10-1520212021-10-15journal articlehttp://purl.org/coar/resource_type/c_6501info:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/20.500.14352/4551reponame:Docta Complutenseinstname:Universidad Complutense de Madrid (UCM)Inglésengopen accesshttp://purl.org/coar/access_right/c_abf2Atribución 3.0 Españahttps://creativecommons.org/licenses/by/3.0/es/info:eu-repo/semantics/openAccessoai:docta.ucm.es:20.500.14352/45512026-06-02T12:44:21Z
dc.title.none.fl_str_mv Advances in Xmipp for cryo-electron microscopy: from Xmipp to Scipion
title Advances in Xmipp for cryo-electron microscopy: from Xmipp to Scipion
spellingShingle Advances in Xmipp for cryo-electron microscopy: from Xmipp to Scipion
Strelak, David
535
Single-particle analysis
Local resolution
Quality assessment
Reconstruction
Alignment
Software
Accurate
Protein
3dem
Integration
Óptica (Física)
2209.19 Óptica Física
title_short Advances in Xmipp for cryo-electron microscopy: from Xmipp to Scipion
title_full Advances in Xmipp for cryo-electron microscopy: from Xmipp to Scipion
title_fullStr Advances in Xmipp for cryo-electron microscopy: from Xmipp to Scipion
title_full_unstemmed Advances in Xmipp for cryo-electron microscopy: from Xmipp to Scipion
title_sort Advances in Xmipp for cryo-electron microscopy: from Xmipp to Scipion
dc.creator.none.fl_str_mv Strelak, David
Jiménez Moreno, Amaya
Vilas, José Luis
Ramírez Aportela, Erney
Sánchez García, Rubén
Maluenda, David
Vargas Balbuena, Javier
Herreros, David
Fernández Giménez, Estrella
Isidro Gómez, Federico P. de
Horacek, Jan
Myska, David
Horacek, Martin
Conesa, Pablo
Fonseca-Reyna, Yunior C.
Jiménez, Jorge
Martínez, Marta
Harastani, Mohamad
Jonic, Slavica
Filipovic, Jiri
Marabini, Roberto
Carazo, José María
Sorzano, Carlos O. S
author Strelak, David
author_facet Strelak, David
Jiménez Moreno, Amaya
Vilas, José Luis
Ramírez Aportela, Erney
Sánchez García, Rubén
Maluenda, David
Vargas Balbuena, Javier
Herreros, David
Fernández Giménez, Estrella
Isidro Gómez, Federico P. de
Horacek, Jan
Myska, David
Horacek, Martin
Conesa, Pablo
Fonseca-Reyna, Yunior C.
Jiménez, Jorge
Martínez, Marta
Harastani, Mohamad
Jonic, Slavica
Filipovic, Jiri
Marabini, Roberto
Carazo, José María
Sorzano, Carlos O. S
author_role author
author2 Jiménez Moreno, Amaya
Vilas, José Luis
Ramírez Aportela, Erney
Sánchez García, Rubén
Maluenda, David
Vargas Balbuena, Javier
Herreros, David
Fernández Giménez, Estrella
Isidro Gómez, Federico P. de
Horacek, Jan
Myska, David
Horacek, Martin
Conesa, Pablo
Fonseca-Reyna, Yunior C.
Jiménez, Jorge
Martínez, Marta
Harastani, Mohamad
Jonic, Slavica
Filipovic, Jiri
Marabini, Roberto
Carazo, José María
Sorzano, Carlos O. S
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidad Complutense de Madrid
dc.subject.none.fl_str_mv 535
Single-particle analysis
Local resolution
Quality assessment
Reconstruction
Alignment
Software
Accurate
Protein
3dem
Integration
Óptica (Física)
2209.19 Óptica Física
topic 535
Single-particle analysis
Local resolution
Quality assessment
Reconstruction
Alignment
Software
Accurate
Protein
3dem
Integration
Óptica (Física)
2209.19 Óptica Física
description Xmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National Center for Biotechnology, although with contributions from many other developers over the world. During its 25 years of existence, Xmipp underwent multiple changes and updates. While there were many publications related to new programs and functionality added to Xmipp, there is no single publication on the Xmipp as a package since 2013. In this article, we give an overview of the changes and new work since 2013, describe technologies and techniques used during the development, and take a peek at the future of the package.
publishDate 2021
dc.date.none.fl_str_mv 2021
2021-10-15
2021
2021-10-15
dc.type.none.fl_str_mv journal article
http://purl.org/coar/resource_type/c_6501
dc.type.openaire.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.none.fl_str_mv https://hdl.handle.net/20.500.14352/4551
url https://hdl.handle.net/20.500.14352/4551
dc.language.none.fl_str_mv Inglés
eng
language_invalid_str_mv Inglés
language eng
dc.rights.none.fl_str_mv open access
http://purl.org/coar/access_right/c_abf2
Atribución 3.0 España
https://creativecommons.org/licenses/by/3.0/es/
dc.rights.openaire.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv open access
http://purl.org/coar/access_right/c_abf2
Atribución 3.0 España
https://creativecommons.org/licenses/by/3.0/es/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Docta Complutense
instname:Universidad Complutense de Madrid (UCM)
instname_str Universidad Complutense de Madrid (UCM)
reponame_str Docta Complutense
collection Docta Complutense
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15.301603

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