Bacterial genomes with arhdA hits from GTDB (R07-RS207), genome taxonomy and number of hits per method
Table showing the number of hits per genome of the aromatic ring-hydroxylating dioxygenase alpha subunit from a survey among species-representative GTDB genomes (R07-RS207). The results of two identification methods are compared, one using using HMMER with the Pfam profile PF00848 and a subsequent c...
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| Tipo de recurso: | conjunto de datos |
| Fecha de publicación: | 2025 |
| País: | España |
| Institución: | Consorci de Serveis Universitaris de Catalunya (CSUC) |
| Repositorio: | CORA.Repositori de Dades de Recerca |
| OAI Identifier: | oai:dnet:cora.rdr____::5e1178d58eef48ec07eb65b4aa9544f2 |
| Acceso en línea: | https://doi.org/10.34810/DATA2017 |
| Access Level: | acceso abierto |
| Palabra clave: | Earth and Environmental Sciences Aromatic Hydrocarbons Ring Hydroxylating Dioxygenases Bacteria |
| Sumario: | Table showing the number of hits per genome of the aromatic ring-hydroxylating dioxygenase alpha subunit from a survey among species-representative GTDB genomes (R07-RS207). The results of two identification methods are compared, one using using HMMER with the Pfam profile PF00848 and a subsequent curation step with a phylogenetic placement tool, and the other using hmm profiles related to aromatic ring dioxygenases from the CANT-HYD approach. |
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