A genotyping array for the globally invasive vector mosquito, Aedes albopictus

[Background] Although whole-genome sequencing (WGS) is the preferred genotyping method for most genomic analyses, limitations are often experienced when studying genomes characterized by a high percentage of repetitive elements, high linkage, and recombination deserts. The Asian tiger mosquito (Aede...

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Detalhes bibliográficos
Autores: Cosme, Luciano Veiga, Corley, Margaret, Johnson, Thomas, Severson, Dave W., Yan, Guiyun, Wang, Xiaoming, Beebe, Nigel, Maynard, Andrew, Bonizzoni, Mariangela, Khorramnejad, Ayda, Martins, Ademir Jesus, Lima, José Bento Pereira, Munstermann, Leonard E., Surendran, Sinnathamby N., Chen, Chun-Hong, Maringer, Kevin, Wahid, Isra, Mukherjee, Shomen, Xu, Jiannon, Fontaine, Michael C., Estallo, Elizabet L., Stein, Marina, Livdahl, Todd, Scaraffia, Patricia Y., Carter, Brendan H., Mogi, Motoyoshi, Tuno, Nobuko, Mains, James W., Medley, Kim A., Bowles, David E., Gill, Richard J., Eritja, Roger, González-Obando, Ranulfo, Trang, Huynh T. T., Boyer, Sébastien, Abunyewa, Ann-Marie, Hackett, Kayleigh, Wu, Tina, Nguyễn, Justin, Shen, Jiangnan, Zhao, Hongyu, Crawford, Jacob E., Armbruster, Peter, Caccone, Adalgisa
Tipo de documento: artigo
Estado:Versão publicada
Data de publicação:2024
País:España
Recursos:Consejo Superior de Investigaciones Científicas (CSIC)
Repositório:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/386548
Acesso em linha:http://hdl.handle.net/10261/386548
https://api.elsevier.com/content/abstract/scopus_id/85186542346
Access Level:Acceso aberto
Palavra-chave:Aedes albopictus
Population genomics
SNP chip
Validation
Descrição
Resumo:[Background] Although whole-genome sequencing (WGS) is the preferred genotyping method for most genomic analyses, limitations are often experienced when studying genomes characterized by a high percentage of repetitive elements, high linkage, and recombination deserts. The Asian tiger mosquito (Aedes albopictus), for example, has a genome comprising up to 72% repetitive elements, and therefore we set out to develop a single-nucleotide polymorphism (SNP) chip to be more cost-effective. Aedes albopictus is an invasive species originating from Southeast Asia that has recently spread around the world and is a vector for many human diseases. Developing an accessible genotyping platform is essential in advancing biological control methods and understanding the population dynamics of this pest species, with significant implications for public health.

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