Supplementary Materials: Ecological relevance of flagellar motility in soil bacterial communities
The PDF file includes: Supplementary Figures 1-9. -- Table S1. -- Supplementary Figure 1. Prediction of the capacity to display flagellar motility in bacterial taxa based on presence/absence information of 21 genes involved in flagellar assembly. -- Supplementary Figure 2. Taxonomic distribution of...
| Autores: | , , , , , , |
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| Tipo de recurso: | conjunto de datos |
| Fecha de publicación: | 2024 |
| País: | España |
| Institución: | Consejo Superior de Investigaciones Científicas (CSIC) |
| Repositorio: | DIGITAL.CSIC. Repositorio Institucional del CSIC |
| OAI Identifier: | oai:digital.csic.es:10261/387762 |
| Acceso en línea: | http://hdl.handle.net/10261/387762 |
| Access Level: | acceso abierto |
| Palabra clave: | Community-aggregated traits Flagellar motility Machine learning Microbial life history strategies Soil bacterial community Soil carbon Trait-based microbial ecology |
| Sumario: | The PDF file includes: Supplementary Figures 1-9. -- Table S1. -- Supplementary Figure 1. Prediction of the capacity to display flagellar motility in bacterial taxa based on presence/absence information of 21 genes involved in flagellar assembly. -- Supplementary Figure 2. Taxonomic distribution of genomes with empirically determined capacity for flagellar motility that were used as training data for a boosted regression machine learning model to predict the capacity for flagellar motility based on the presence/absence of 21 flagellar genes. -- Supplementary Figure 3. Predictive accuracy across phyla of a boosted regression machine learning model for the prediction of the capacity for flagellar motility in any given bacterial genome based on the presence/absence of 21 flagellar genes. -- Supplementary Figure 4. Prevalence of flagellar motility across bacterial families containing more than 100 high-quality genomes in the Genome Taxonomy Database (GTDB r207; [27]). -- Supplementary Figure 5. Variation in flagellar motility status across taxonomic ranks. -- Supplementary Figure 6. Distribution of the total number of 16S rRNA gene copies per genome and genome size across the 6 phyla with even proportions of taxa predicted to be flagellated and non-flagellated. -- Supplementary Figure 7. Estimated prevalence of flagellar motility in bacterial communities from 9 soil depth profiles collected across the USA (Surface, 0-20cm; Subsurface, 20-90cm, N = 66; [64]). -- Supplementary Figure 8. Difference in the prevalence of flagellar motility in rhizosphere and bulk soil bacterial communities collected from citrus species across the globe (N = 10; [67]). -- Supplementary Figure 9. Taxonomic composition of the Amplicon Sequence Variants (ASVs) that responded to glucose amendment in soil. -- Table S1. Summary of the shotgun sequencing reads generated from a soil incubation experiment where soils were amended or not with glucose over a 117-day period [70]. |
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