Proximity Mapping of CCP6 Reveals Its Association with Centrosome Organization and Cilium Assembly

The cytosolic carboxypeptidase 6 (CCP6) catalyzes the deglutamylation of polyglutamate side chains, a post-translational modification that affects proteins such as tubulins or nucleosome assembly proteins. CCP6 is involved in several cell processes, such as spermatogenesis, antiviral activity, embry...

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Detalles Bibliográficos
Autores: Rodriguez-Calado, Sergi|||0000-0002-8849-1101, Van Damme, Petra|||0000-0001-9090-027X, Avilés, Francesc Xavier|||0000-0002-1399-6789, Candiota Silveira, Ana Paula|||0000-0002-1523-6505, Tanco, Sebastián Martín|||0000-0003-2130-4401, Lorenzo Rivera, Julia|||0000-0001-5659-6008
Tipo de recurso: artículo
Fecha de publicación:2023
País:España
Institución:Universitat Autònoma de Barcelona
Repositorio:Dipòsit Digital de Documents de la UAB
Idioma:inglés
OAI Identifier:oai:ddd.uab.cat:270862
Acceso en línea:https://ddd.uab.cat/record/270862
https://dx.doi.org/urn:doi:10.3390/ijms24021273
Access Level:acceso abierto
Palabra clave:Cytosolic carboxypeptidases
CCP6
Polyglutamylation
Proteomics
Biotin-dependent proximity labeling (BioID)
BirA*
Centrioles
Cilia
Joubert syndrome
Cilium assembly
Descripción
Sumario:The cytosolic carboxypeptidase 6 (CCP6) catalyzes the deglutamylation of polyglutamate side chains, a post-translational modification that affects proteins such as tubulins or nucleosome assembly proteins. CCP6 is involved in several cell processes, such as spermatogenesis, antiviral activity, embryonic development, and pathologies like renal adenocarcinoma. In the present work, the cellular role of CCP6 has been assessed by BioID, a proximity labeling approach for mapping physiologically relevant protein-protein interactions (PPIs) and bait proximal proteins by mass spectrometry. We used HEK 293 cells stably expressing CCP6-BirA* to identify 37 putative interactors of this enzyme. This list of CCP6 proximal proteins displayed enrichment of proteins associated with the centrosome and centriolar satellites, indicating that CCP6 could be present in the pericentriolar material. In addition, we identified cilium assembly-related proteins as putative interactors of CCP6. In addition, the CCP6 proximal partner list included five proteins associated with the Joubert syndrome, a ciliopathy linked to defects in polyglutamylation. Using the proximity ligation assay (PLA), we show that PCM1, PIBF1, and NudC are true CCP6 physical interactors. Therefore, the BioID methodology confirms the location and possible functional role of CCP6 in centrosomes and centrioles, as well as in the formation and maintenance of primary cilia.