Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031

Ralstonia solanacearum is the causative agent of bacterial wilt of potato. Ralstonia solanacearum strain UY031 belongs to the American phylotype IIB, sequevar 1, also classified as race 3 biovar 2. Here we report the completely sequenced genome of this strain, the first complete genome for phylotype...

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Autores: Guarischi-Sousa, Rodrigo|||0000-0002-3614-9996, Puigvert, Marina|||0000-0002-2898-2187, Sánchez Coll, Núria|||0000-0002-8889-0399, Siri, María Inés, Pianzzola, María Julia, Valls, Marc|||0000-0003-2312-0091, Setubal, João C.
Tipo de recurso: artículo
Fecha de publicación:2016
País:España
Institución:Universitat Autònoma de Barcelona
Repositorio:Dipòsit Digital de Documents de la UAB
Idioma:inglés
OAI Identifier:oai:ddd.uab.cat:185767
Acceso en línea:https://ddd.uab.cat/record/185767
https://dx.doi.org/urn:doi:10.1186/s40793-016-0131-4
Access Level:acceso abierto
Palabra clave:Short genome report
Bacterial wilt
Ralstonia solanacearum
Bacterial plant pathogen
Methylome
Uruguay
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spelling Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031Guarischi-Sousa, Rodrigo|||0000-0002-3614-9996Puigvert, Marina|||0000-0002-2898-2187Sánchez Coll, Núria|||0000-0002-8889-0399Siri, María InésPianzzola, María JuliaValls, Marc|||0000-0003-2312-0091Setubal, João C.Short genome reportBacterial wiltRalstonia solanacearumBacterial plant pathogenMethylomeUruguayRalstonia solanacearum is the causative agent of bacterial wilt of potato. Ralstonia solanacearum strain UY031 belongs to the American phylotype IIB, sequevar 1, also classified as race 3 biovar 2. Here we report the completely sequenced genome of this strain, the first complete genome for phylotype IIB, sequevar 1, and the fourth for the R. solanacearum species complex. In addition to standard genome annotation, we have carried out a curated annotation of type III effector genes, an important pathogenicity-related class of genes for this organism. We identified 60 effector genes, and observed that this effector repertoire is distinct when compared to those from other phylotype IIB strains. Eleven of the effectors appear to be nonfunctional due to disruptive mutations. We also report a methylome analysis of this genome, the first for a R. solanacearum strain. This analysis helped us note the presence of a toxin gene within a region of probable phage origin, raising the hypothesis that this gene may play a role in this strain's virulence. 22016-01-0120162016-01-01Articlehttp://purl.org/coar/resource_type/c_6501VoRhttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleapplication/pdfhttps://ddd.uab.cat/record/185767https://dx.doi.org/urn:doi:10.1186/s40793-016-0131-4reponame:Dipòsit Digital de Documents de la UABinstname:Universitat Autònoma de BarcelonaInglésengopen accesshttp://purl.org/coar/access_right/c_abf2Aquest document està subjecte a una llicència d'ús Creative Commons en que s'entrega l'obra al domini públic. Podeu copiar, modificar, distribuir l'obra i fer-ne comunicació pública, fins i tot amb finalitat comercial, sense demanar cap mena de permís.https://creativecommons.org/publicdomain/zero/1.0/info:eu-repo/semantics/openAccessoai:ddd.uab.cat:1857672026-06-06T12:50:31Z
dc.title.none.fl_str_mv Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
title Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
spellingShingle Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
Guarischi-Sousa, Rodrigo|||0000-0002-3614-9996
Short genome report
Bacterial wilt
Ralstonia solanacearum
Bacterial plant pathogen
Methylome
Uruguay
title_short Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
title_full Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
title_fullStr Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
title_full_unstemmed Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
title_sort Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031
dc.creator.none.fl_str_mv Guarischi-Sousa, Rodrigo|||0000-0002-3614-9996
Puigvert, Marina|||0000-0002-2898-2187
Sánchez Coll, Núria|||0000-0002-8889-0399
Siri, María Inés
Pianzzola, María Julia
Valls, Marc|||0000-0003-2312-0091
Setubal, João C.
author Guarischi-Sousa, Rodrigo|||0000-0002-3614-9996
author_facet Guarischi-Sousa, Rodrigo|||0000-0002-3614-9996
Puigvert, Marina|||0000-0002-2898-2187
Sánchez Coll, Núria|||0000-0002-8889-0399
Siri, María Inés
Pianzzola, María Julia
Valls, Marc|||0000-0003-2312-0091
Setubal, João C.
author_role author
author2 Puigvert, Marina|||0000-0002-2898-2187
Sánchez Coll, Núria|||0000-0002-8889-0399
Siri, María Inés
Pianzzola, María Julia
Valls, Marc|||0000-0003-2312-0091
Setubal, João C.
author2_role author
author
author
author
author
author
dc.subject.none.fl_str_mv Short genome report
Bacterial wilt
Ralstonia solanacearum
Bacterial plant pathogen
Methylome
Uruguay
topic Short genome report
Bacterial wilt
Ralstonia solanacearum
Bacterial plant pathogen
Methylome
Uruguay
description Ralstonia solanacearum is the causative agent of bacterial wilt of potato. Ralstonia solanacearum strain UY031 belongs to the American phylotype IIB, sequevar 1, also classified as race 3 biovar 2. Here we report the completely sequenced genome of this strain, the first complete genome for phylotype IIB, sequevar 1, and the fourth for the R. solanacearum species complex. In addition to standard genome annotation, we have carried out a curated annotation of type III effector genes, an important pathogenicity-related class of genes for this organism. We identified 60 effector genes, and observed that this effector repertoire is distinct when compared to those from other phylotype IIB strains. Eleven of the effectors appear to be nonfunctional due to disruptive mutations. We also report a methylome analysis of this genome, the first for a R. solanacearum strain. This analysis helped us note the presence of a toxin gene within a region of probable phage origin, raising the hypothesis that this gene may play a role in this strain's virulence.
publishDate 2016
dc.date.none.fl_str_mv 2
2016-01-01
2016
2016-01-01
dc.type.none.fl_str_mv Article
http://purl.org/coar/resource_type/c_6501
VoR
http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.openaire.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.none.fl_str_mv https://ddd.uab.cat/record/185767
https://dx.doi.org/urn:doi:10.1186/s40793-016-0131-4
url https://ddd.uab.cat/record/185767
https://dx.doi.org/urn:doi:10.1186/s40793-016-0131-4
dc.language.none.fl_str_mv Inglés
eng
language_invalid_str_mv Inglés
language eng
dc.rights.none.fl_str_mv open access
http://purl.org/coar/access_right/c_abf2
https://creativecommons.org/publicdomain/zero/1.0/
dc.rights.openaire.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv open access
http://purl.org/coar/access_right/c_abf2
https://creativecommons.org/publicdomain/zero/1.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Dipòsit Digital de Documents de la UAB
instname:Universitat Autònoma de Barcelona
instname_str Universitat Autònoma de Barcelona
reponame_str Dipòsit Digital de Documents de la UAB
collection Dipòsit Digital de Documents de la UAB
repository.name.fl_str_mv
repository.mail.fl_str_mv
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