Supplementary information for the identification of DArTSeq markers associated with stem cross section, heading and height in durum wheat

Fichero con 4 tablas suplementarias. DArTSeq markers with a significant match to Svevo genome; List of accessions; Location of markers within the confidence intervals of selected QTLs by other authors, Location of markers associated with lodging and stem diameter.

Bibliographic Details
Authors: Ávila, Carmen M., Requena-Ramírez, María Dolores, Rodríguez-Suárez, Cristina, Flores, Fernando, Sillero, Josefina C., Atienza, Sergio G.
Format: conjunto de datos
Publication Date:2021
Country:España
Institution:Consejo Superior de Investigaciones Científicas (CSIC)
Repository:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/289476
Online Access:http://hdl.handle.net/10261/289476
Access Level:Open access
Keyword:GWAS
DArTSeq markers
Durum wheat
Landraces
id ES_7dcecccd450efd746ce7075aee569458
oai_identifier_str oai:digital.csic.es:10261/289476
network_acronym_str ES
network_name_str España
repository_id_str
dc.title.none.fl_str_mv Supplementary information for the identification of DArTSeq markers associated with stem cross section, heading and height in durum wheat
title Supplementary information for the identification of DArTSeq markers associated with stem cross section, heading and height in durum wheat
spellingShingle Supplementary information for the identification of DArTSeq markers associated with stem cross section, heading and height in durum wheat
Ávila, Carmen M.
GWAS
DArTSeq markers
Durum wheat
Landraces
title_short Supplementary information for the identification of DArTSeq markers associated with stem cross section, heading and height in durum wheat
title_full Supplementary information for the identification of DArTSeq markers associated with stem cross section, heading and height in durum wheat
title_fullStr Supplementary information for the identification of DArTSeq markers associated with stem cross section, heading and height in durum wheat
title_full_unstemmed Supplementary information for the identification of DArTSeq markers associated with stem cross section, heading and height in durum wheat
title_sort Supplementary information for the identification of DArTSeq markers associated with stem cross section, heading and height in durum wheat
dc.creator.none.fl_str_mv Ávila, Carmen M.
Requena-Ramírez, María Dolores
Rodríguez-Suárez, Cristina
Flores, Fernando
Sillero, Josefina C.
Atienza, Sergio G.
author Ávila, Carmen M.
author_facet Ávila, Carmen M.
Requena-Ramírez, María Dolores
Rodríguez-Suárez, Cristina
Flores, Fernando
Sillero, Josefina C.
Atienza, Sergio G.
author_role author
author2 Requena-Ramírez, María Dolores
Rodríguez-Suárez, Cristina
Flores, Fernando
Sillero, Josefina C.
Atienza, Sergio G.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Instituto de Investigación y Formación Agraria y Pesquera (España)
Junta de Andalucía
European Commission
Ministerio de Economía, Industria y Competitividad (España)
Ministerio de Ciencia, Innovación y Universidades (España)
Ávila, Carmen M. [0000-0001-5710-0799]
Requena-Ramírez, María Dolores [0000-0002-4981-561X]
Rodríguez-Suárez, Cristina [0000-0002-5409-1839]
Flores, Fernando [0000-0002-5247-2267]
Sillero, Josefina C. [0000-0002-5878-9054]
Atienza, Sergio G. [0000-0001-5175-8303]
Atienza, Sergio G. [sgatienza@ias.csic.es]
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv GWAS
DArTSeq markers
Durum wheat
Landraces
topic GWAS
DArTSeq markers
Durum wheat
Landraces
description Fichero con 4 tablas suplementarias. DArTSeq markers with a significant match to Svevo genome; List of accessions; Location of markers within the confidence intervals of selected QTLs by other authors, Location of markers associated with lodging and stem diameter.
publishDate 2021
dc.date.none.fl_str_mv 2021
2021
2023
2023
dc.type.none.fl_str_mv info:eu-repo/semantics/dataset
http://purl.org/coar/resource_type/c_ddb1
format dataset
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/289476
url http://hdl.handle.net/10261/289476
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv #PLACEHOLDER_PARENT_METADATA_VALUE#
#PLACEHOLDER_PARENT_METADATA_VALUE#
info:eu-repo/grantAgreement///
info:eu-repo/grantAgreement///
Ávila, Carmen M.; Requena-Ramírez, María Dolores; Rodríguez-Suárez, Cristina; Flores, Fernando; Sillero, Josefina C.; Atienza, Sergio G. Genome-Wide Association Analysis for Stem Cross Section Properties, Height and Heading Date in a Collection of Spanish Durum Wheat Landraces. Plants 10(6): 1123 (2021). http://doi.org/10.3390/plants10061123 . http://hdl.handle.net/10261/247643
https://doi.org/10.3390/plants10061123
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv xlsx
dc.publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute
publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
_version_ 1869411690640048128
spelling Supplementary information for the identification of DArTSeq markers associated with stem cross section, heading and height in durum wheatÁvila, Carmen M.Requena-Ramírez, María DoloresRodríguez-Suárez, CristinaFlores, FernandoSillero, Josefina C.Atienza, Sergio G.GWASDArTSeq markersDurum wheatLandracesFichero con 4 tablas suplementarias. DArTSeq markers with a significant match to Svevo genome; List of accessions; Location of markers within the confidence intervals of selected QTLs by other authors, Location of markers associated with lodging and stem diameter.[Description of methods used for collection/generation of data] Table S1. BLASTn search was performed using BLAST+. DArTSeq sequences were used as a query against the durum wheat coding sequences (nucleotides) of annotated high (HC) and low (LC) confidence genes. Table S2. Passport information was retrieved from The Spanish Inventory of Plant Genetic Resources. Available online: https://https://bancocrf.inia.es/en/ Table S3. Positions of markers associated to wheat sawfly resistance reported by Varella et al. 2019 (DOI:10.1534/ge.119.400240) in the Svevo genome was obtained from https://wheat.pw.usda.gov/GG3/jbrowse_Durum_Svevo. Table S4. Position of markers associated with lodging and stem diameter in bread wheat was retrieved from the Wheat Chinese Spring genome assembly (https://wheat.pw.usda.gov/GG3/genome_browser) using the QTL track.Dataset published as supplementary material of Ávila et al. (2021), https://doi.org/10.3390/plants10061123). This dataset includes all the DArTSeq markers with a significant match to 'Svevo' genome that were used for the Genome Wide Association Scan (GWAS) for agronomic and stem cross section properties. It also details the list of durum wheat landraces studied in this work and the position of markers in the Svevo genome reported by other authors used for comparative analyses with the results obtained in this work.This research was funded by the Instituto de Investigación y Formación Agraria y Pesquera (IFAPA), Junta de Andalucía, grant number AVA-AVA2019.020 cofounded at 80% by FEDER. C.M.A., J.S. and S.G.A. are members of the FiRCMe Network, funded by Ministerio de Economía, Industria y Competitividad (AGL2016-81855-REDT). M.D.R.-R. was the recipient of a fellowship from the Ministerio de Ciencia, Innovación y Universidades (PRE2018-084037).Contains four tables: Table S1, Table S2, Table S3, Table S4.Table S1. BLASTn alignment of DArTSeq markers sequences against durum wheat reference genome 'Svevo' High Confidence and Low Confidence gene models.Table S2. List of durum wheat accessions studied in this work. Further details can be found at The Spanish Inventory of Plant Genetic Resources. Available online: https://https://bancocrf.inia.es/en/Table S3. Localization of markers within the confidence intervals of QTLs for wheat stem sawfly reported by Varella et al. 2019 (DOI:10.1534/ge.119.400240) in the Svevo genome. Table S4. Markers associated with lodging and stem diameter in bread wheat used for comparisons with results in durum wheat.Peer reviewedMultidisciplinary Digital Publishing InstituteInstituto de Investigación y Formación Agraria y Pesquera (España)Junta de AndalucíaEuropean CommissionMinisterio de Economía, Industria y Competitividad (España)Ministerio de Ciencia, Innovación y Universidades (España)Ávila, Carmen M. [0000-0001-5710-0799]Requena-Ramírez, María Dolores [0000-0002-4981-561X]Rodríguez-Suárez, Cristina [0000-0002-5409-1839]Flores, Fernando [0000-0002-5247-2267]Sillero, Josefina C. [0000-0002-5878-9054]Atienza, Sergio G. [0000-0001-5175-8303]Atienza, Sergio G. [sgatienza@ias.csic.es]Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]2023202320212021info:eu-repo/semantics/datasethttp://purl.org/coar/resource_type/c_ddb1xlsxhttp://hdl.handle.net/10261/289476reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement///info:eu-repo/grantAgreement///Ávila, Carmen M.; Requena-Ramírez, María Dolores; Rodríguez-Suárez, Cristina; Flores, Fernando; Sillero, Josefina C.; Atienza, Sergio G. Genome-Wide Association Analysis for Stem Cross Section Properties, Height and Heading Date in a Collection of Spanish Durum Wheat Landraces. Plants 10(6): 1123 (2021). http://doi.org/10.3390/plants10061123 . http://hdl.handle.net/10261/247643https://doi.org/10.3390/plants10061123Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/2894762026-05-22T06:33:51Z
score 15,81155

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