Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction

La investigación en la UAM fue financiada por las becas MICROAMBIENTE-CM (para R.R.), BIO2009-08254 (para M.M.) y Marie Curie MIGENOF113 (para M.S.-C. y R.R.). Esta investigación recibió apoyo parcial mediante becas otorgadas a FOG por la Science Foundation of Ireland (07IN.1/B948, 08/RFP/GEN1295, 0...

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Autores: Redondo-Nieto, Miguel, Barret, Matthieu, Morrissey, John, Germaine, Kieran, Martínez-Granero, Francisco, Barahona, Emma, Navazo, Ana, Sánchez-Contreras, María, Moynihan, Jennifer, Muriel, Candela, Dowling, David, Fergal, O´Gara, Martín, Marta, Rivilla, Rafael
Formato: artículo
Fecha de publicación:2013
País:España
Recursos:Universidad Rey Juan Carlos
Repositorio:BURJC-Digital. Repositorio Institucional de la Universidad Rey Juan Carlos
OAI Identifier:oai:burjcdigital.urjc.es:10115/27844
Acesso em linha:https://hdl.handle.net/10115/27844
Access Level:acceso abierto
Palavra-chave:plant growth-promoting rhizobacterium
biocontrol agent
Comparative analysis of 50 genome sequences
complete denitrification pathway
second flagellar apparatus
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spelling Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interactionRedondo-Nieto, MiguelBarret, MatthieuMorrissey, JohnGermaine, KieranMartínez-Granero, FranciscoBarahona, EmmaNavazo, AnaSánchez-Contreras, MaríaMoynihan, JenniferMuriel, CandelaDowling, DavidFergal, O´GaraMartín, MartaRivilla, Rafaelplant growth-promoting rhizobacteriumbiocontrol agentComparative analysis of 50 genome sequencescomplete denitrification pathwaysecond flagellar apparatusLa investigación en la UAM fue financiada por las becas MICROAMBIENTE-CM (para R.R.), BIO2009-08254 (para M.M.) y Marie Curie MIGENOF113 (para M.S.-C. y R.R.). Esta investigación recibió apoyo parcial mediante becas otorgadas a FOG por la Science Foundation of Ireland (07IN.1/B948, 08/RFP/GEN1295, 08/RFP/GEN1319, SFI09/RFP/BMT2350); el Departamento de Agricultura, Pesca y Alimentación (becas RSF 06–321 y 06–377; becas FIRM 06RDC459 06RDC506 y 08RDC629); la Comisión Europea (MTKD-CT-2006-042062, Marie Curie TOK:TRAMWAYS, EU256596, MicroB3-287589-OCEAN2012, MACUMBA-CP-TP 311975; PharmaSea-CP-TP 312184); IRCSET (05/EDIV/FP107/INTERPAM, EMBARK), la Marine Institute Beaufort award (C&CRA 2007/082), la Agencia de Protección Ambiental (EPA 2006-PhD-S-21, EPA 2008-PhD-S-2) y el HRB (RP/2006/271, RP/2007/290, HRA/2009/146). El laboratorio de KG & DD fue financiado en parte por una beca SFI Tida y el proyecto TSR III Agribiotics del Departamento de Educación.Pseudomonas fluorescens F113 is a plant growth-promoting rhizobacterium (PGPR) isolated from the sugar-beet rhizosphere. This bacterium has been extensively studied as a model strain for genetic regulation of secondary metabolite production in P. fluorescens, as a candidate biocontrol agent against phytopathogens, and as a heterologous host for expression of genes with biotechnological application. The F113 genome sequence and annotation has been recently reported. Comparative analysis of 50 genome sequences of strains belonging to the P. fluorescens group has revealed the existence of five distinct subgroups. F113 belongs to subgroup I, which is mostly composed of strains classified as P. brassicacearum. The core genome of these five strains is highly conserved and represents approximately 76% of the protein-coding genes in any given genome. Despite this strong conservation, F113 also contains a large number of unique protein-coding genes that encode traits potentially involved in the rhizocompetence of this strain. These features include protein coding genes required for denitrification, diterpenoids catabolism, motility and chemotaxis, protein secretion and production of antimicrobial compounds and insect toxins. The genome of P. fluorescens F113 is composed of numerous protein-coding genes, not usually found together in previously sequenced genomes, which are potentially decisive during the colonisation of the rhizosphere and/or interaction with other soil organisms. This includes genes encoding proteins involved in the production of a second flagellar apparatus, the use of abietic acid as a growth substrate, the complete denitrification pathway, the possible production of a macrolide antibiotic and the assembly of multiple protein secretion systems.Spring Nature202320232013info:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/10115/27844reponame:BURJC-Digital. Repositorio Institucional de la Universidad Rey Juan Carlosinstname:Universidad Rey Juan CarlosInglésAtribución 4.0 Internacionalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessoai:burjcdigital.urjc.es:10115/278442026-06-24T12:48:17Z
dc.title.none.fl_str_mv Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction
title Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction
spellingShingle Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction
Redondo-Nieto, Miguel
plant growth-promoting rhizobacterium
biocontrol agent
Comparative analysis of 50 genome sequences
complete denitrification pathway
second flagellar apparatus
title_short Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction
title_full Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction
title_fullStr Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction
title_full_unstemmed Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction
title_sort Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction
dc.creator.none.fl_str_mv Redondo-Nieto, Miguel
Barret, Matthieu
Morrissey, John
Germaine, Kieran
Martínez-Granero, Francisco
Barahona, Emma
Navazo, Ana
Sánchez-Contreras, María
Moynihan, Jennifer
Muriel, Candela
Dowling, David
Fergal, O´Gara
Martín, Marta
Rivilla, Rafael
author Redondo-Nieto, Miguel
author_facet Redondo-Nieto, Miguel
Barret, Matthieu
Morrissey, John
Germaine, Kieran
Martínez-Granero, Francisco
Barahona, Emma
Navazo, Ana
Sánchez-Contreras, María
Moynihan, Jennifer
Muriel, Candela
Dowling, David
Fergal, O´Gara
Martín, Marta
Rivilla, Rafael
author_role author
author2 Barret, Matthieu
Morrissey, John
Germaine, Kieran
Martínez-Granero, Francisco
Barahona, Emma
Navazo, Ana
Sánchez-Contreras, María
Moynihan, Jennifer
Muriel, Candela
Dowling, David
Fergal, O´Gara
Martín, Marta
Rivilla, Rafael
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv plant growth-promoting rhizobacterium
biocontrol agent
Comparative analysis of 50 genome sequences
complete denitrification pathway
second flagellar apparatus
topic plant growth-promoting rhizobacterium
biocontrol agent
Comparative analysis of 50 genome sequences
complete denitrification pathway
second flagellar apparatus
description La investigación en la UAM fue financiada por las becas MICROAMBIENTE-CM (para R.R.), BIO2009-08254 (para M.M.) y Marie Curie MIGENOF113 (para M.S.-C. y R.R.). Esta investigación recibió apoyo parcial mediante becas otorgadas a FOG por la Science Foundation of Ireland (07IN.1/B948, 08/RFP/GEN1295, 08/RFP/GEN1319, SFI09/RFP/BMT2350); el Departamento de Agricultura, Pesca y Alimentación (becas RSF 06–321 y 06–377; becas FIRM 06RDC459 06RDC506 y 08RDC629); la Comisión Europea (MTKD-CT-2006-042062, Marie Curie TOK:TRAMWAYS, EU256596, MicroB3-287589-OCEAN2012, MACUMBA-CP-TP 311975; PharmaSea-CP-TP 312184); IRCSET (05/EDIV/FP107/INTERPAM, EMBARK), la Marine Institute Beaufort award (C&CRA 2007/082), la Agencia de Protección Ambiental (EPA 2006-PhD-S-21, EPA 2008-PhD-S-2) y el HRB (RP/2006/271, RP/2007/290, HRA/2009/146). El laboratorio de KG & DD fue financiado en parte por una beca SFI Tida y el proyecto TSR III Agribiotics del Departamento de Educación.
publishDate 2013
dc.date.none.fl_str_mv 2013
2023
2023
dc.type.none.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.none.fl_str_mv https://hdl.handle.net/10115/27844
url https://hdl.handle.net/10115/27844
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.rights.none.fl_str_mv Atribución 4.0 Internacional
http://creativecommons.org/licenses/by/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Atribución 4.0 Internacional
http://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Spring Nature
publisher.none.fl_str_mv Spring Nature
dc.source.none.fl_str_mv reponame:BURJC-Digital. Repositorio Institucional de la Universidad Rey Juan Carlos
instname:Universidad Rey Juan Carlos
instname_str Universidad Rey Juan Carlos
reponame_str BURJC-Digital. Repositorio Institucional de la Universidad Rey Juan Carlos
collection BURJC-Digital. Repositorio Institucional de la Universidad Rey Juan Carlos
repository.name.fl_str_mv
repository.mail.fl_str_mv
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