Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification

21 pages, 4 figures, 1 table, supporting information https://doi.org/10.1002/ece3.9740.-- Data Availability Statement: Raw RNA-seq data and mt-mutS sequences have been uploaded to NCBI's SRA (BioProject ID: PRJNA847883) and GenBank databases (Accessions numbers: ON804207-ON804214), respectively...

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Autores: Coelho, Márcio A.G., Pearson, Gareth A., Boavida-Portugal, Joana, Paulo, Diogo, Aurelle, Didier, Arnaud-Haond, Sophie, Gómez-Gras, D., Bensoussan, Nathaniel, López-Sendino, P., Cerrano, Carlo, Kipson, Silvija, Bakran-Petricioli, Tatjana, Ferretti, Eliana, Linares, Cristina, Garrabou, Joaquim, Serrao, Ester Álvares, Ledoux, J. B.
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2023
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/305303
Acceso en línea:http://hdl.handle.net/10261/305303
Access Level:acceso abierto
Palabra clave:Atlantic-Mediterranean transition
Cryptic diversity
Incomplete lineage sorting
Octocorallia
Phylotranscriptomics
Species delimitation
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
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network_name_str España
repository_id_str
dc.title.none.fl_str_mv Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification
title Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification
spellingShingle Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification
Coelho, Márcio A.G.
Atlantic-Mediterranean transition
Cryptic diversity
Incomplete lineage sorting
Octocorallia
Phylotranscriptomics
Species delimitation
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
title_short Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification
title_full Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification
title_fullStr Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification
title_full_unstemmed Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification
title_sort Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification
dc.creator.none.fl_str_mv Coelho, Márcio A.G.
Pearson, Gareth A.
Boavida-Portugal, Joana
Paulo, Diogo
Aurelle, Didier
Arnaud-Haond, Sophie
Gómez-Gras, D.
Bensoussan, Nathaniel
López-Sendino, P.
Cerrano, Carlo
Kipson, Silvija
Bakran-Petricioli, Tatjana
Ferretti, Eliana
Linares, Cristina
Garrabou, Joaquim
Serrao, Ester Álvares
Ledoux, J. B.
author Coelho, Márcio A.G.
author_facet Coelho, Márcio A.G.
Pearson, Gareth A.
Boavida-Portugal, Joana
Paulo, Diogo
Aurelle, Didier
Arnaud-Haond, Sophie
Gómez-Gras, D.
Bensoussan, Nathaniel
López-Sendino, P.
Cerrano, Carlo
Kipson, Silvija
Bakran-Petricioli, Tatjana
Ferretti, Eliana
Linares, Cristina
Garrabou, Joaquim
Serrao, Ester Álvares
Ledoux, J. B.
author_role author
author2 Pearson, Gareth A.
Boavida-Portugal, Joana
Paulo, Diogo
Aurelle, Didier
Arnaud-Haond, Sophie
Gómez-Gras, D.
Bensoussan, Nathaniel
López-Sendino, P.
Cerrano, Carlo
Kipson, Silvija
Bakran-Petricioli, Tatjana
Ferretti, Eliana
Linares, Cristina
Garrabou, Joaquim
Serrao, Ester Álvares
Ledoux, J. B.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Foundation for Science and Technology
European Commission
Inaqua Marine Ecosystem Conservation Fund
National Geographic Society
European Maritime and Fisheries Fund
Ministério da Economia (Portugal)
Agencia Estatal de Investigación (España)
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Atlantic-Mediterranean transition
Cryptic diversity
Incomplete lineage sorting
Octocorallia
Phylotranscriptomics
Species delimitation
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
topic Atlantic-Mediterranean transition
Cryptic diversity
Incomplete lineage sorting
Octocorallia
Phylotranscriptomics
Species delimitation
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
description 21 pages, 4 figures, 1 table, supporting information https://doi.org/10.1002/ece3.9740.-- Data Availability Statement: Raw RNA-seq data and mt-mutS sequences have been uploaded to NCBI's SRA (BioProject ID: PRJNA847883) and GenBank databases (Accessions numbers: ON804207-ON804214), respectively. Final sequence alignments and microsatellite data are available on DRYAD (https://doi.org/10.5061/dryad.r7sqv9sfm)
publishDate 2023
dc.date.none.fl_str_mv 2023
2023
2023
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
Publisher's version
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/305303
url http://hdl.handle.net/10261/305303
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv #PLACEHOLDER_PARENT_METADATA_VALUE#
info:eu-repo/grantAgreement/EC/H2020/689518
https://doi.org/10.1002/ece3.9740
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv John Wiley & Sons
publisher.none.fl_str_mv John Wiley & Sons
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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spelling Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversificationCoelho, Márcio A.G.Pearson, Gareth A.Boavida-Portugal, JoanaPaulo, DiogoAurelle, DidierArnaud-Haond, SophieGómez-Gras, D.Bensoussan, NathanielLópez-Sendino, P.Cerrano, CarloKipson, SilvijaBakran-Petricioli, TatjanaFerretti, ElianaLinares, CristinaGarrabou, JoaquimSerrao, Ester ÁlvaresLedoux, J. B.Atlantic-Mediterranean transitionCryptic diversityIncomplete lineage sortingOctocoralliaPhylotranscriptomicsSpecies delimitationhttp://metadata.un.org/sdg/14Conserve and sustainably use the oceans, seas and marine resources for sustainable development21 pages, 4 figures, 1 table, supporting information https://doi.org/10.1002/ece3.9740.-- Data Availability Statement: Raw RNA-seq data and mt-mutS sequences have been uploaded to NCBI's SRA (BioProject ID: PRJNA847883) and GenBank databases (Accessions numbers: ON804207-ON804214), respectively. Final sequence alignments and microsatellite data are available on DRYAD (https://doi.org/10.5061/dryad.r7sqv9sfm)The accurate delimitation of species boundaries in nonbilaterian marine taxa is notoriously difficult, with consequences for many studies in ecology and evolution. Anthozoans are a diverse group of key structural organisms worldwide, but the lack of reliable morphological characters and informative genetic markers hampers our ability to understand species diversification. We investigated population differentiation and species limits in Atlantic (Iberian Peninsula) and Mediterranean lineages of the octocoral genus Paramuricea previously identified as P. clavata. We used a diverse set of molecular markers (microsatellites, RNA-seq derived single-copy orthologues [SCO] and mt-mutS [mitochondrial barcode]) at 49 locations. Clear segregation of Atlantic and Mediterranean lineages was found with all markers. Species-tree estimations based on SCO strongly supported these two clades as distinct, recently diverged sister species with incomplete lineage sorting, P. cf. grayi and P. clavata, respectively. Furthermore, a second putative (or ongoing) speciation event was detected in the Atlantic between two P. cf. grayi color morphotypes (yellow and purple) using SCO and supported by microsatellites. While segregating P. cf. grayi lineages showed considerable geographic structure, dominating circalittoral communities in southern (yellow) and western (purple) Portugal, their occurrence in sympatry at some localities suggests a degree of reproductive isolation. Overall, our results show that previous molecular and morphological studies have underestimated species diversity in Paramuricea occurring in the Iberian Peninsula, which has important implications for conservation planning. Finally, our findings validate the usefulness of phylotranscriptomics for resolving evolutionary relationships in octocoralsThis work was funded by program BIOMARES, a Pew Marine Fellowship, and FCT – Foundation for Science and Technology UIDB/04326/2020, UIDP/04326/2020, LA/P/0101/2020, PTDC/BIA-CBI/6515/2020; EU-BiodivERsA BiodivRestore-253 (FCT: DivRestore/0013/2020); EU Horizon 2020 research and innovation program (MERCES: Grant no. 689518); as well as the Inaqua Conservation Fund (Oceanário de Lisboa and National Geographic Channel) and National Geographic Society/Waitt Grant no. W153-11. This article is also a product of the French network on Marine Connectivity (GDR MarCo). M.C. was supported by postdoctoral fellowships of projects HABMAR (Grant no. MAR-01.04.02-FEAMP-0018) co-financed by the European Maritime and Fisheries Fund of the Operational Program MAR 2020 for Portugal (Portugal 2020), and BiodivAMP (Grant no. FA_06_2017_045) financed by the Directorate-General for Sea Policy of the Ministry of Economy and Sea for Portugal under the Operational Program Fundo Azul. JBL was funded by assistant researcher contract framework of the RD Unit—UID/Multi/04423/2019 – Interdisciplinary Centre of Marine and Environmental Research—financed by the European Regional Development Fund (ERDF) through COMPETE2020—Operational Program for Competitiveness and Internationalization (POCI) and national funds through FCT/MCTES (PIDDAC). JB was funded by a FCT PhD scholarship SFRH/BD/72501/2010With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S)Peer reviewedJohn Wiley & SonsFoundation for Science and TechnologyEuropean CommissionInaqua Marine Ecosystem Conservation FundNational Geographic SocietyEuropean Maritime and Fisheries FundMinistério da Economia (Portugal)Agencia Estatal de Investigación (España)Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202320232023info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionhttp://hdl.handle.net/10261/305303reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/EC/H2020/689518https://doi.org/10.1002/ece3.9740Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3053032026-05-22T06:33:51Z
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