KEGG-Orthology-parser
When working with genome annotations, you'll likely encounter a long list of KO numbers. In such cases, you might want to include the entire KEGG hierarchy in your annotations for various downstream analyses. Your first thought might be, "If I had a table with the complete hierarchical KEG...
| Autor: | |
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| Tipo de recurso: | conjunto de datos |
| Fecha de publicación: | 2026 |
| País: | España |
| Institución: | Consorci de Serveis Universitaris de Catalunya (CSUC) |
| Repositorio: | CORA.Repositori de Dades de Recerca |
| OAI Identifier: | oai:dnet:cora.rdr____::2b7307df677af476e6fadf8e58d479b2 |
| Acceso en línea: | https://doi.org/10.34810/DATA3148 |
| Access Level: | acceso abierto |
| Palabra clave: | Medicine, Health and Life Sciences KEGG tsv_parser |
| Sumario: | When working with genome annotations, you'll likely encounter a long list of KO numbers. In such cases, you might want to include the entire KEGG hierarchy in your annotations for various downstream analyses. Your first thought might be, "If I had a table with the complete hierarchical KEGG orthology, I could simply merge my annotations with it." However, reality and imagination do not always meet face to face. You will find it's not that straightforward to compile hierarchical information formats into simple and readable tables. This script helps parse one of the available KEGG formats, converting the entire orthology into a simple tabular form, preserving the hierachical information in a readable form. |
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