Population dynamics and genetic connectivity in recent chimpanzee history
Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive...
| Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Tipo de documento: | artigo |
| Estado: | Versão publicada |
| Data de publicação: | 2022 |
| País: | España |
| Recursos: | Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya) |
| Repositório: | Recercat. Dipósit de la Recerca de Catalunya |
| OAI Identifier: | oai:recercat.cat:10256/21766 |
| Acesso em linha: | http://hdl.handle.net/10256/21766 |
| Access Level: | Acceso aberto |
| Palavra-chave: | Ximpanzés Chimpanzees Genòmica Genomics Genètica de poblacions Population genetics |
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Population dynamics and genetic connectivity in recent chimpanzee history |
| title |
Population dynamics and genetic connectivity in recent chimpanzee history |
| spellingShingle |
Population dynamics and genetic connectivity in recent chimpanzee history Fontseré Alemany, Clàudia Ximpanzés Chimpanzees Genòmica Genomics Genètica de poblacions Population genetics |
| title_short |
Population dynamics and genetic connectivity in recent chimpanzee history |
| title_full |
Population dynamics and genetic connectivity in recent chimpanzee history |
| title_fullStr |
Population dynamics and genetic connectivity in recent chimpanzee history |
| title_full_unstemmed |
Population dynamics and genetic connectivity in recent chimpanzee history |
| title_sort |
Population dynamics and genetic connectivity in recent chimpanzee history |
| dc.creator.none.fl_str_mv |
Fontseré Alemany, Clàudia Kuhlwilm, Martin Morcillo Suárez, Carlos Alvarez-Estape, Marina Lester, Jack de Gratton, Paolo Schmidt, Joshua M. Diéguez, Paula Aebischer, Thierry Álvarez-Varona, Paula Agbor, Anthony Angedakin, Samuel Assumang, Alfred K. Ayimisin, Emmanuel A. Bailey, Emma Barubiyo, Donatienne Bessone, Mattia Carretero-Alonso, Andrea Chancellor, Rebecca Cohen, Heather Danquah, Emmanuel Deschner, Tobias Dunn, Andrew Dupain, Jef Egbe, Villard E. Feliu, Olga Goedmakers, Annemarie Granjon, Anne-Céline Head, Josephine Hedwig, Daniela Hermans, Veerle Hernández Aguilar, Adriana Imong, Inaoyom Jones, Sorrel Junker, Jessica Kadam, Parag Kaiser, Mike Kambere, Mbangi Kambale, Magloire V. Kalan, Ammie K. Kienast, Ivonne Kujirakwinja, Deo Langergraber, Kevin Lapuente, Juan Larson, Bradley Laudisoit, Anne Lee, Kevin Llana, Manuel Llorente Espino, Miquel Marrocoli, Sergio Morgan, David Mulindahabi, Felix Murai, Mizuki Neil, Emily Nicholl, Sonia Nixon, Stuart Normand, Emma Orbell, Chris Ormsby, Lucy J. Pacheco, Liliana Piel, Alex Riera, Laura Robbins, Martha M. Rundus, Aaron Sanz, Crickette Sciaky, Lilah Sommer, Volker Stewart, Fiona A. Tagg, Nikki Tédonzong, Luc Roscelin Ton, Els Schijndel, Joost van Vergnes, Virginie Wessling, Erin G. Willie, Jacob Wittig, Roman M. Yuh, Yisa G. Yurkiw, Kyle Zuberbuehler, Klaus Hecht, Jochen Vigilant, Linda Boesch, Christophe Andrés, Aida M. Hughes, David A. Kühl, Hjalmar S. Lizano, Esther Arandjelovic, Mimi Marques-Bonet, Tomas |
| author |
Fontseré Alemany, Clàudia |
| author_facet |
Fontseré Alemany, Clàudia Kuhlwilm, Martin Morcillo Suárez, Carlos Alvarez-Estape, Marina Lester, Jack de Gratton, Paolo Schmidt, Joshua M. Diéguez, Paula Aebischer, Thierry Álvarez-Varona, Paula Agbor, Anthony Angedakin, Samuel Assumang, Alfred K. Ayimisin, Emmanuel A. Bailey, Emma Barubiyo, Donatienne Bessone, Mattia Carretero-Alonso, Andrea Chancellor, Rebecca Cohen, Heather Danquah, Emmanuel Deschner, Tobias Dunn, Andrew Dupain, Jef Egbe, Villard E. Feliu, Olga Goedmakers, Annemarie Granjon, Anne-Céline Head, Josephine Hedwig, Daniela Hermans, Veerle Hernández Aguilar, Adriana Imong, Inaoyom Jones, Sorrel Junker, Jessica Kadam, Parag Kaiser, Mike Kambere, Mbangi Kambale, Magloire V. Kalan, Ammie K. Kienast, Ivonne Kujirakwinja, Deo Langergraber, Kevin Lapuente, Juan Larson, Bradley Laudisoit, Anne Lee, Kevin Llana, Manuel Llorente Espino, Miquel Marrocoli, Sergio Morgan, David Mulindahabi, Felix Murai, Mizuki Neil, Emily Nicholl, Sonia Nixon, Stuart Normand, Emma Orbell, Chris Ormsby, Lucy J. Pacheco, Liliana Piel, Alex Riera, Laura Robbins, Martha M. Rundus, Aaron Sanz, Crickette Sciaky, Lilah Sommer, Volker Stewart, Fiona A. Tagg, Nikki Tédonzong, Luc Roscelin Ton, Els Schijndel, Joost van Vergnes, Virginie Wessling, Erin G. Willie, Jacob Wittig, Roman M. Yuh, Yisa G. Yurkiw, Kyle Zuberbuehler, Klaus Hecht, Jochen Vigilant, Linda Boesch, Christophe Andrés, Aida M. Hughes, David A. Kühl, Hjalmar S. Lizano, Esther Arandjelovic, Mimi Marques-Bonet, Tomas |
| author_role |
author |
| author2 |
Kuhlwilm, Martin Morcillo Suárez, Carlos Alvarez-Estape, Marina Lester, Jack de Gratton, Paolo Schmidt, Joshua M. Diéguez, Paula Aebischer, Thierry Álvarez-Varona, Paula Agbor, Anthony Angedakin, Samuel Assumang, Alfred K. Ayimisin, Emmanuel A. Bailey, Emma Barubiyo, Donatienne Bessone, Mattia Carretero-Alonso, Andrea Chancellor, Rebecca Cohen, Heather Danquah, Emmanuel Deschner, Tobias Dunn, Andrew Dupain, Jef Egbe, Villard E. Feliu, Olga Goedmakers, Annemarie Granjon, Anne-Céline Head, Josephine Hedwig, Daniela Hermans, Veerle Hernández Aguilar, Adriana Imong, Inaoyom Jones, Sorrel Junker, Jessica Kadam, Parag Kaiser, Mike Kambere, Mbangi Kambale, Magloire V. Kalan, Ammie K. Kienast, Ivonne Kujirakwinja, Deo Langergraber, Kevin Lapuente, Juan Larson, Bradley Laudisoit, Anne Lee, Kevin Llana, Manuel Llorente Espino, Miquel Marrocoli, Sergio Morgan, David Mulindahabi, Felix Murai, Mizuki Neil, Emily Nicholl, Sonia Nixon, Stuart Normand, Emma Orbell, Chris Ormsby, Lucy J. Pacheco, Liliana Piel, Alex Riera, Laura Robbins, Martha M. Rundus, Aaron Sanz, Crickette Sciaky, Lilah Sommer, Volker Stewart, Fiona A. Tagg, Nikki Tédonzong, Luc Roscelin Ton, Els Schijndel, Joost van Vergnes, Virginie Wessling, Erin G. Willie, Jacob Wittig, Roman M. Yuh, Yisa G. Yurkiw, Kyle Zuberbuehler, Klaus Hecht, Jochen Vigilant, Linda Boesch, Christophe Andrés, Aida M. Hughes, David A. Kühl, Hjalmar S. Lizano, Esther Arandjelovic, Mimi Marques-Bonet, Tomas |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.subject.none.fl_str_mv |
Ximpanzés Chimpanzees Genòmica Genomics Genètica de poblacions Population genetics |
| topic |
Ximpanzés Chimpanzees Genòmica Genomics Genètica de poblacions Population genetics |
| description |
Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees |
| publishDate |
2022 |
| dc.date.none.fl_str_mv |
2022 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion peer-reviewed |
| format |
article |
| status_str |
publishedVersion |
| dc.identifier.none.fl_str_mv |
http://hdl.handle.net/10256/21766 http://hdl.handle.net/10256/21766 |
| url |
http://hdl.handle.net/10256/21766 |
| dc.language.none.fl_str_mv |
Inglés |
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Inglés |
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info:eu-repo/semantics/altIdentifier/doi/10.1016/j.xgen.2022.100133 info:eu-repo/semantics/altIdentifier/eissn/2666-979X |
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Attribution-NonCommercial-NoDerivatives 4.0 International http://creativecommons.org/licenses/by-nc-nd/4.0/ info:eu-repo/semantics/openAccess |
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Attribution-NonCommercial-NoDerivatives 4.0 International http://creativecommons.org/licenses/by-nc-nd/4.0/ |
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openAccess |
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application/pdf |
| dc.publisher.none.fl_str_mv |
Elsevier |
| publisher.none.fl_str_mv |
Elsevier |
| dc.source.none.fl_str_mv |
Cell Genomics, 2022, vol. 2, núm. 6, p.100133 Articles publicats (D-PS) reponame:Recercat. Dipósit de la Recerca de Catalunya instname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya) |
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Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya) |
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Recercat. Dipósit de la Recerca de Catalunya |
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Population dynamics and genetic connectivity in recent chimpanzee historyFontseré Alemany, ClàudiaKuhlwilm, MartinMorcillo Suárez, CarlosAlvarez-Estape, MarinaLester, Jack deGratton, PaoloSchmidt, Joshua M.Diéguez, PaulaAebischer, ThierryÁlvarez-Varona, PaulaAgbor, AnthonyAngedakin, SamuelAssumang, Alfred K.Ayimisin, Emmanuel A.Bailey, EmmaBarubiyo, DonatienneBessone, MattiaCarretero-Alonso, AndreaChancellor, RebeccaCohen, HeatherDanquah, EmmanuelDeschner, TobiasDunn, AndrewDupain, JefEgbe, Villard E.Feliu, OlgaGoedmakers, AnnemarieGranjon, Anne-CélineHead, JosephineHedwig, DanielaHermans, VeerleHernández Aguilar, AdrianaImong, InaoyomJones, SorrelJunker, JessicaKadam, ParagKaiser, MikeKambere, MbangiKambale, Magloire V.Kalan, Ammie K.Kienast, IvonneKujirakwinja, DeoLangergraber, KevinLapuente, JuanLarson, BradleyLaudisoit, AnneLee, KevinLlana, ManuelLlorente Espino, MiquelMarrocoli, SergioMorgan, DavidMulindahabi, FelixMurai, MizukiNeil, EmilyNicholl, SoniaNixon, StuartNormand, EmmaOrbell, ChrisOrmsby, Lucy J.Pacheco, LilianaPiel, AlexRiera, LauraRobbins, Martha M.Rundus, AaronSanz, CricketteSciaky, LilahSommer, VolkerStewart, Fiona A.Tagg, NikkiTédonzong, Luc RoscelinTon, ElsSchijndel, Joost vanVergnes, VirginieWessling, Erin G.Willie, JacobWittig, Roman M.Yuh, Yisa G.Yurkiw, KyleZuberbuehler, KlausHecht, JochenVigilant, LindaBoesch, ChristopheAndrés, Aida M.Hughes, David A.Kühl, Hjalmar S.Lizano, EstherArandjelovic, MimiMarques-Bonet, TomasXimpanzésChimpanzeesGenòmicaGenomicsGenètica de poblacionsPopulation geneticsKnowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzeesFunding: “la Caixa” Foundation doctoral fellowship program LCF/BQ/DE15/10360006 (to C.F.). FPI (Formación de Personal Investigador) PRE2018-083966 from Ministerio de Ciencia, Universidades e Investigación (to M.A.-E.) and CGL2017-82654-P (MINECO/FEDER, UE) (to E.L.). “la Caixa” Foundation (ID 100010434), fellowship code LCF/BQ/PR19/11700002 (to M.K.). Vienna Science and Technology Fund (WWTF) and the City of Vienna project VRG20-001 (to M.K.). The European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement no. 864203) (to T.M.-B.). BFU2017-86471-P (MINECO/FEDER, UE) (to T.M.-B.). “Unidad de Excelencia María de Maeztu”, funded by the AEI (CEX2018-000792-M) (to T.M.-B.). Howard Hughes International Early Career (to T.M.-B.). NIH 1R01HG010898-01A1 (to T.M.-B.). Secretaria d’Universitats i Recerca and CERCA Program del Departament d’Economia i Coneixement de la Generalitat de Catalunya (GRC 2017 SGR 880) (to T.M.-B.). UCL’s Wellcome Trust ISSF3 award 204841/Z/16/Z (to A.M.A. and J.M.S.). Generalitat de Catalunya (2017 SGR-1040) (to M. Llorente). Wellcome Trust Investigator Award 202802/Z/16/Z (to D.A.H.). The Pan African Program: The Cultured Chimpanzee (PanAf) is generously funded by the Max Planck Society, the Max Planck Society Innovation Fund, and the Heinz L. Krekeler FoundationElsevier2022info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionpeer-reviewedapplication/pdfhttp://hdl.handle.net/10256/21766http://hdl.handle.net/10256/21766Cell Genomics, 2022, vol. 2, núm. 6, p.100133Articles publicats (D-PS)reponame:Recercat. Dipósit de la Recerca de Catalunyainstname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)Inglésinfo:eu-repo/semantics/altIdentifier/doi/10.1016/j.xgen.2022.100133info:eu-repo/semantics/altIdentifier/eissn/2666-979XAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessoai:recercat.cat:10256/217662026-05-29T05:05:01Z |
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15.81155 |