Patterns and drivers of diatom diversity and abundance in the global ocean
This article is contribution number 156 of Tara Oceans.-- 21 pages, 9 figures, supplementary information https://doi.org/10.1038/s41467-025-58027-7.-- Data availability: The authors declare that all the data supporting the findings of this study are publicly available in the following repositories a...
| Autores: | , , , , , , , , , , , , , , , |
|---|---|
| Tipo de recurso: | artículo |
| Estado: | Versión publicada |
| Fecha de publicación: | 2025 |
| País: | España |
| Institución: | Consejo Superior de Investigaciones Científicas (CSIC) |
| Repositorio: | DIGITAL.CSIC. Repositorio Institucional del CSIC |
| OAI Identifier: | oai:digital.csic.es:10261/389464 |
| Acceso en línea: | http://hdl.handle.net/10261/389464 |
| Access Level: | acceso abierto |
| Palabra clave: | http://metadata.un.org/sdg/14 Conserve and sustainably use the oceans, seas and marine resources for sustainable development |
| Sumario: | This article is contribution number 156 of Tara Oceans.-- 21 pages, 9 figures, supplementary information https://doi.org/10.1038/s41467-025-58027-7.-- Data availability: The authors declare that all the data supporting the findings of this study are publicly available in the following repositories and in the supplementary information files of this paper. The contextual data are available in Pangaea (www.pangaea.de) with the identifier https://doi.org/10.1594/PANGAEA.875582, and a simplified version is available in https://zenodo.org/records/7229815. rDNA 18S metabarcoding data are deposited at the European Nucleotide Archive under accession numbers PRJEB6610 and PRJEB9737, and metagenomic and metatranscriptomic data under PRJEB402, PRJEB9691, PRJEB9738 and PRJEB9739. The ASV table and the taxonomic annotation for the V4 marker are available in https://zenodo.org/records/13881376 and for the V9 marker in https://zenodo.org/records/13881418. The files for the Marine Atlas of Tara Oceans Unigenes version 1.5 (MATOU-v1.5) are available in https://www.genoscope.cns.fr/tara/#MATOU-1.5, including the FASTA sequences, taxonomic and functional annotation tables, as well as metagenomic and metatranscriptomic abundance tables. The manually curated MAGs by Delmont et al.72 are available at https://www.genoscope.cns.fr/tara/#SMAGs. Flow cytometry data are available at https://data.mendeley.com/datasets/p9r9wttjkm/2. Source data are provided in this paper.-- Code availability: Scripts producing the ASV tables are publicly available here: https://gitlab.univ-nantes.fr/combi-ls2n/taradada. The scripts for the ASV taxonomic assignment are publicly available here: https://gitlab.sb-roscoff.fr/nhenry/abims-metabarcoding-taxonomic-assignment/-/tree/v1.0.1. Scripts for producing the figures in this paper are in https://github.com/JJPierellaKarlusich/Diatom_patters/tree/main (Pierella Karlusich, JJ, Patterns and drivers of diatom diversity and abundance in the global ocean, Zenodo, https://doi.org/10.5281/zenodo.14890007, 2025) |
|---|