Assessment of short-term spatio-temporal variability in the structure of mesozooplankton communities integrating microscopy and multigene high-throughput sequencing
Variability in composition and structure of the mesozooplankton communities in the Bay of Malaga (SW Mediterranean) were characterized during a 26 h cycle using an integrative taxonomic approach. We combined microscopic identification of organisms, with metabarcoding for the genes of the mitochondri...
| Autores: | , , , , , , , |
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| Tipo de recurso: | artículo |
| Estado: | Versión publicada |
| Fecha de publicación: | 2022 |
| País: | España |
| Institución: | Consejo Superior de Investigaciones Científicas (CSIC) |
| Repositorio: | DIGITAL.CSIC. Repositorio Institucional del CSIC |
| OAI Identifier: | oai:digital.csic.es:10261/320226 |
| Acceso en línea: | http://hdl.handle.net/10261/320226 |
| Access Level: | acceso abierto |
| Palabra clave: | 18S rRNA V9 Integrative taxonomy Metabarcoding Microscopy mtDNA COI SW Mediterranean Zooplankton biodiversity trophic relationships |
| Sumario: | Variability in composition and structure of the mesozooplankton communities in the Bay of Malaga (SW Mediterranean) were characterized during a 26 h cycle using an integrative taxonomic approach. We combined microscopic identification of organisms, with metabarcoding for the genes of the mitochondrial DNA COI and the V9 hypervariable region of the ribosomal RNA 18S. Richness and diversity obtained by microscopy were higher than those measured with COI, as COI did not detect some phyla. COI however allowed for the identification to species level of several taxa that were left at higher taxonomic rank under the microscope. 18S detected a wider range of taxa than COI and microscopy, although with lower taxonomic resolution. Differences between coastal-night and shelf-day zooplankton communities structure were detected by both microscopy and metabarcoding. The combination of these two approaches increased the known copepod species in the SW Mediterranean Sea by 9%. An integrative approach combining morphology and COI metabarcoding is proposed to further facilitate mesozooplankton biodiversity studies. |
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