GEPAS: A web-based resource for microarray gene expression data analysis

We present a web-based pipeline for microarray gene expression profile analysis, GEPAS, which stands for Gene Expression Profile Analysis Suite (http://gepas.bioinfo.cnio.es). GEPAS is composed of different interconnected modules which include tools for data pre-processing, two-conditions comparison...

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Detalhes bibliográficos
Autores: Herrero, Javier, Al-Shahrour, Fátima, Díaz Uriarte, Ramón, Mateos, Álvaro, Vaquerizas, Juan M., Santoyo, Javier, Dopazo, Joaquín
Formato: artículo
Fecha de publicación:2003
País:España
Recursos:Universidad Autónoma de Madrid
Repositorio:Biblos-e Archivo. Repositorio Institucional de la UAM
Idioma:inglés
OAI Identifier:oai:repositorio.uam.es:10486/678304
Acesso em linha:http://hdl.handle.net/10486/678304
https://dx.doi.org/10.1093/nar/gkg591
Access Level:acceso abierto
Palavra-chave:Microarray gene expression
GEPAS
Analysis
Data
Gene Ontology
Medicina
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spelling GEPAS: A web-based resource for microarray gene expression data analysisHerrero, JavierAl-Shahrour, FátimaDíaz Uriarte, RamónMateos, ÁlvaroVaquerizas, Juan M.Santoyo, JavierDopazo, JoaquínMicroarray gene expressionGEPASAnalysisDataGene OntologyMedicinaWe present a web-based pipeline for microarray gene expression profile analysis, GEPAS, which stands for Gene Expression Profile Analysis Suite (http://gepas.bioinfo.cnio.es). GEPAS is composed of different interconnected modules which include tools for data pre-processing, two-conditions comparison, unsupervised and supervised clustering (which include some of the most popular methods as well as home made algorithms) and several tests for differential gene expression among different classes, continuous variables or survival analysis. A multiple purpose tool for data mining, based on Gene Ontology, is also linked to the tools, which constitutes a very convenient way of analysing clustering results. On-line tutorials are available from our main web server (http://bioinfo.cnio.es).F.A. is supported by grant BIO2001-0068 from MCYT, J.H. is supported by a CNIO fellowship, A.M. is supported by a IBM fellowship, R.D.U. is supported by a Ramón y Cajal research contract from the MCyT.Oxford University PressDepartamento de BioquímicaFacultad de Medicina20032003-07-01research articlehttp://purl.org/coar/resource_type/c_2df8fbb1VoRhttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10486/678304https://dx.doi.org/10.1093/nar/gkg591reponame:Biblos-e Archivo. Repositorio Institucional de la UAMinstname:Universidad Autónoma de MadridInglésengopen accesshttp://purl.org/coar/access_right/c_abf2info:eu-repo/semantics/openAccessoai:repositorio.uam.es:10486/6783042026-06-23T12:46:27Z
dc.title.none.fl_str_mv GEPAS: A web-based resource for microarray gene expression data analysis
title GEPAS: A web-based resource for microarray gene expression data analysis
spellingShingle GEPAS: A web-based resource for microarray gene expression data analysis
Herrero, Javier
Microarray gene expression
GEPAS
Analysis
Data
Gene Ontology
Medicina
title_short GEPAS: A web-based resource for microarray gene expression data analysis
title_full GEPAS: A web-based resource for microarray gene expression data analysis
title_fullStr GEPAS: A web-based resource for microarray gene expression data analysis
title_full_unstemmed GEPAS: A web-based resource for microarray gene expression data analysis
title_sort GEPAS: A web-based resource for microarray gene expression data analysis
dc.creator.none.fl_str_mv Herrero, Javier
Al-Shahrour, Fátima
Díaz Uriarte, Ramón
Mateos, Álvaro
Vaquerizas, Juan M.
Santoyo, Javier
Dopazo, Joaquín
author Herrero, Javier
author_facet Herrero, Javier
Al-Shahrour, Fátima
Díaz Uriarte, Ramón
Mateos, Álvaro
Vaquerizas, Juan M.
Santoyo, Javier
Dopazo, Joaquín
author_role author
author2 Al-Shahrour, Fátima
Díaz Uriarte, Ramón
Mateos, Álvaro
Vaquerizas, Juan M.
Santoyo, Javier
Dopazo, Joaquín
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Departamento de Bioquímica
Facultad de Medicina
dc.subject.none.fl_str_mv Microarray gene expression
GEPAS
Analysis
Data
Gene Ontology
Medicina
topic Microarray gene expression
GEPAS
Analysis
Data
Gene Ontology
Medicina
description We present a web-based pipeline for microarray gene expression profile analysis, GEPAS, which stands for Gene Expression Profile Analysis Suite (http://gepas.bioinfo.cnio.es). GEPAS is composed of different interconnected modules which include tools for data pre-processing, two-conditions comparison, unsupervised and supervised clustering (which include some of the most popular methods as well as home made algorithms) and several tests for differential gene expression among different classes, continuous variables or survival analysis. A multiple purpose tool for data mining, based on Gene Ontology, is also linked to the tools, which constitutes a very convenient way of analysing clustering results. On-line tutorials are available from our main web server (http://bioinfo.cnio.es).
publishDate 2003
dc.date.none.fl_str_mv 2003
2003-07-01
dc.type.none.fl_str_mv research article
http://purl.org/coar/resource_type/c_2df8fbb1
VoR
http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.openaire.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.none.fl_str_mv http://hdl.handle.net/10486/678304
https://dx.doi.org/10.1093/nar/gkg591
url http://hdl.handle.net/10486/678304
https://dx.doi.org/10.1093/nar/gkg591
dc.language.none.fl_str_mv Inglés
eng
language_invalid_str_mv Inglés
language eng
dc.rights.none.fl_str_mv open access
http://purl.org/coar/access_right/c_abf2
dc.rights.openaire.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv open access
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv reponame:Biblos-e Archivo. Repositorio Institucional de la UAM
instname:Universidad Autónoma de Madrid
instname_str Universidad Autónoma de Madrid
reponame_str Biblos-e Archivo. Repositorio Institucional de la UAM
collection Biblos-e Archivo. Repositorio Institucional de la UAM
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15.300719

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