The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast Saccharomyces cerevisiae

This article belongs to the Section Molecular Informatics.

Detalles Bibliográficos
Autores: Mattenberger, Florian, Fares, Mario A., Toft, Christina, Sabater-Muñoz, Beatriz
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2021
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/255343
Acceso en línea:http://hdl.handle.net/10261/255343
Access Level:acceso abierto
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spelling The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast Saccharomyces cerevisiaeMattenberger, FlorianFares, Mario A.Toft, ChristinaSabater-Muñoz, BeatrizThis article belongs to the Section Molecular Informatics.The cell central metabolism has been shaped throughout evolutionary times when facing challenges from the availability of resources. In the budding yeast, Saccharomyces cerevisiae, a set of duplicated genes originating from an ancestral whole-genome and several coetaneous small-scale duplication events drive energy transfer through glucose metabolism as the main carbon source either by fermentation or respiration. These duplicates (~a third of the genome) have been dated back to approximately 100 MY, allowing for enough evolutionary time to diverge in both sequence and function. Gene duplication has been proposed as a molecular mechanism of biological innovation, maintaining balance between mutational robustness and evolvability of the system. However, some questions concerning the molecular mechanisms behind duplicated genes transcriptional plasticity and functional divergence remain unresolved. In this work we challenged S. cerevisiae to the use of lactic acid/lactate as the sole carbon source and performed a small adaptive laboratory evolution to this non-fermentative carbon source, determining phenotypic and transcriptomic changes. We observed growth adaptation to acidic stress, by reduction of growth rate and increase in biomass production, while the transcriptomic response was mainly driven by repression of the whole-genome duplicates, those implied in glycolysis and overexpression of ROS response. The contribution of several duplicated pairs to this carbon source switch and acidic stress is also discussed.This research was funded by Spanish National Plan for Scientific and Technical Research and Innovation from the Spanish Ministry of Economy and Competitiveness (MINECO-FEDER), actually the Ministry of Science and Innovation (MCIN), Spanish Research Agency (AEI), MCIN/AEI/10.13039/501100011033 and ERDF A way of making Europe (FEDER “Una forma de hacer Europa”) with grant number BFU2015-66073-P (to M.A.F.) and Generalitat Valenciana, Conselleria de Innovacion, Universidades y Sociedad Digital with grant number SEJI/2018/046 (to C.T.). F.M. was supported by a Spanish PhD Fellowship number FPI BES-2016-076677, from MCIN/AEI/10.13039/501100011033 and ESF “Investing in your future”.Peer reviewedMultidisciplinary Digital Publishing InstituteMinisterio de Economía y Competitividad (España)Ministerio de Ciencia, Innovación y Universidades (España)Agencia Estatal de Investigación (España)European CommissionConsejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]2021202120212021info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionhttp://hdl.handle.net/10261/255343reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/MINECO//BFU2015-66073-Phttps://doi.org/10.3390/ijms222212293Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/2553432026-05-22T06:33:51Z
dc.title.none.fl_str_mv The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast Saccharomyces cerevisiae
title The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast Saccharomyces cerevisiae
spellingShingle The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast Saccharomyces cerevisiae
Mattenberger, Florian
title_short The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast Saccharomyces cerevisiae
title_full The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast Saccharomyces cerevisiae
title_fullStr The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast Saccharomyces cerevisiae
title_full_unstemmed The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast Saccharomyces cerevisiae
title_sort The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast Saccharomyces cerevisiae
dc.creator.none.fl_str_mv Mattenberger, Florian
Fares, Mario A.
Toft, Christina
Sabater-Muñoz, Beatriz
author Mattenberger, Florian
author_facet Mattenberger, Florian
Fares, Mario A.
Toft, Christina
Sabater-Muñoz, Beatriz
author_role author
author2 Fares, Mario A.
Toft, Christina
Sabater-Muñoz, Beatriz
author2_role author
author
author
dc.contributor.none.fl_str_mv Ministerio de Economía y Competitividad (España)
Ministerio de Ciencia, Innovación y Universidades (España)
Agencia Estatal de Investigación (España)
European Commission
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
description This article belongs to the Section Molecular Informatics.
publishDate 2021
dc.date.none.fl_str_mv 2021
2021
2021
2021
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
Publisher's version
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/255343
url http://hdl.handle.net/10261/255343
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv #PLACEHOLDER_PARENT_METADATA_VALUE#
info:eu-repo/grantAgreement/MINECO//BFU2015-66073-P
https://doi.org/10.3390/ijms222212293
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute
publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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