A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits
Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessi...
| Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Format: | article |
| Publication Date: | 2019 |
| Country: | España |
| Institution: | Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya) |
| Repository: | Recercat. Dipósit de la Recerca de Catalunya |
| OAI Identifier: | oai:recercat.cat:20.500.12327/616 |
| Online Access: | http://hdl.handle.net/20.500.12327/616 https://doi.org/10.1038/s41588-019-0522-8 |
| Access Level: | Open access |
| Keyword: | 633 |
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A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traitsZhao, GuangweiLian, QunZhang, ZhonghuaFu, QiushiHe, YuhuaMa, ShuangwuRuggieri, ValentinoMonforte, Antonio J.Wang, PingyongJulca, IreneWang, HuaisongLiu, JunpuXu, YongWang, RunzeJi, JiabingXu, ZhihongKong, WeihuZhong, YangShang, JianliPereira, LaraArgyris, JasonZhang, JianMayobre, CarlosPujol, MartaOren, EladOu, DiandianWang, JimingSun, DexiZhao, ShengjieZhu, YingchunLi, NaKatzir, NuritGur, AmitDogimont, CatherineSchaefer, HannoFan, WeiBendahmane, AbdelhafidFei, ZhangjunPitrat, MichelGabaldón, ToniLin, TaoGarcia-Mas, JordiXu, YongyangHuang, Sanwen633Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the species. Our results suggest that three independent domestication events occurred in melon, two in India and one in Africa. We detected two independent sets of domestication sweeps, resulting in diverse characteristics of the two subspecies melo and agrestis during melon breeding. Genome-wide association studies for 16 agronomic traits identified 208 loci significantly associated with fruit mass, quality and morphological characters. This study sheds light on the domestication history of melon and provides a valuable resource for genomics-assisted breeding of this important crop.info:eu-repo/semantics/acceptedVersionNature ResearchProducció VegetalGenòmica i Biotecnologia2019info:eu-repo/semantics/article35http://hdl.handle.net/20.500.12327/616https://doi.org/10.1038/s41588-019-0522-8reponame:Recercat. Dipósit de la Recerca de Catalunyainstname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)InglésNature GeneticsMINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2015-64625-C2-1-R/ES/DISECCION GENETICA DE DOS CARACTERES DE INTERES AGRONOMICO EN MELON: RESISTENCIA A CUCUMBER MOSAIC VIRUS Y MADURACION CLIMATERICA DE FRUTO/RESMELORIPMINECO/Programa Estatal de fomento de la investigación científica y técnica de excelencia/SEV-2015-0533/ES/ /EC/FP7/341076/EU/Unraveling sex determination and parthenocarpy mechanisms to improve crops/SEXYPARTHCopyright © 2019, Springer Natureinfo:eu-repo/semantics/openAccessoai:recercat.cat:20.500.12327/6162026-05-29T05:05:01Z |
| dc.title.none.fl_str_mv |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| title |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| spellingShingle |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits Zhao, Guangwei 633 |
| title_short |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| title_full |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| title_fullStr |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| title_full_unstemmed |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| title_sort |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| dc.creator.none.fl_str_mv |
Zhao, Guangwei Lian, Qun Zhang, Zhonghua Fu, Qiushi He, Yuhua Ma, Shuangwu Ruggieri, Valentino Monforte, Antonio J. Wang, Pingyong Julca, Irene Wang, Huaisong Liu, Junpu Xu, Yong Wang, Runze Ji, Jiabing Xu, Zhihong Kong, Weihu Zhong, Yang Shang, Jianli Pereira, Lara Argyris, Jason Zhang, Jian Mayobre, Carlos Pujol, Marta Oren, Elad Ou, Diandian Wang, Jiming Sun, Dexi Zhao, Shengjie Zhu, Yingchun Li, Na Katzir, Nurit Gur, Amit Dogimont, Catherine Schaefer, Hanno Fan, Wei Bendahmane, Abdelhafid Fei, Zhangjun Pitrat, Michel Gabaldón, Toni Lin, Tao Garcia-Mas, Jordi Xu, Yongyang Huang, Sanwen |
| author |
Zhao, Guangwei |
| author_facet |
Zhao, Guangwei Lian, Qun Zhang, Zhonghua Fu, Qiushi He, Yuhua Ma, Shuangwu Ruggieri, Valentino Monforte, Antonio J. Wang, Pingyong Julca, Irene Wang, Huaisong Liu, Junpu Xu, Yong Wang, Runze Ji, Jiabing Xu, Zhihong Kong, Weihu Zhong, Yang Shang, Jianli Pereira, Lara Argyris, Jason Zhang, Jian Mayobre, Carlos Pujol, Marta Oren, Elad Ou, Diandian Wang, Jiming Sun, Dexi Zhao, Shengjie Zhu, Yingchun Li, Na Katzir, Nurit Gur, Amit Dogimont, Catherine Schaefer, Hanno Fan, Wei Bendahmane, Abdelhafid Fei, Zhangjun Pitrat, Michel Gabaldón, Toni Lin, Tao Garcia-Mas, Jordi Xu, Yongyang Huang, Sanwen |
| author_role |
author |
| author2 |
Lian, Qun Zhang, Zhonghua Fu, Qiushi He, Yuhua Ma, Shuangwu Ruggieri, Valentino Monforte, Antonio J. Wang, Pingyong Julca, Irene Wang, Huaisong Liu, Junpu Xu, Yong Wang, Runze Ji, Jiabing Xu, Zhihong Kong, Weihu Zhong, Yang Shang, Jianli Pereira, Lara Argyris, Jason Zhang, Jian Mayobre, Carlos Pujol, Marta Oren, Elad Ou, Diandian Wang, Jiming Sun, Dexi Zhao, Shengjie Zhu, Yingchun Li, Na Katzir, Nurit Gur, Amit Dogimont, Catherine Schaefer, Hanno Fan, Wei Bendahmane, Abdelhafid Fei, Zhangjun Pitrat, Michel Gabaldón, Toni Lin, Tao Garcia-Mas, Jordi Xu, Yongyang Huang, Sanwen |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.contributor.none.fl_str_mv |
Producció Vegetal Genòmica i Biotecnologia |
| dc.subject.none.fl_str_mv |
633 |
| topic |
633 |
| description |
Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the species. Our results suggest that three independent domestication events occurred in melon, two in India and one in Africa. We detected two independent sets of domestication sweeps, resulting in diverse characteristics of the two subspecies melo and agrestis during melon breeding. Genome-wide association studies for 16 agronomic traits identified 208 loci significantly associated with fruit mass, quality and morphological characters. This study sheds light on the domestication history of melon and provides a valuable resource for genomics-assisted breeding of this important crop. |
| publishDate |
2019 |
| dc.date.none.fl_str_mv |
2019 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article |
| format |
article |
| dc.identifier.none.fl_str_mv |
http://hdl.handle.net/20.500.12327/616 https://doi.org/10.1038/s41588-019-0522-8 |
| url |
http://hdl.handle.net/20.500.12327/616 https://doi.org/10.1038/s41588-019-0522-8 |
| dc.language.none.fl_str_mv |
Inglés |
| language_invalid_str_mv |
Inglés |
| dc.relation.none.fl_str_mv |
Nature Genetics MINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2015-64625-C2-1-R/ES/DISECCION GENETICA DE DOS CARACTERES DE INTERES AGRONOMICO EN MELON: RESISTENCIA A CUCUMBER MOSAIC VIRUS Y MADURACION CLIMATERICA DE FRUTO/RESMELORIP MINECO/Programa Estatal de fomento de la investigación científica y técnica de excelencia/SEV-2015-0533/ES/ / EC/FP7/341076/EU/Unraveling sex determination and parthenocarpy mechanisms to improve crops/SEXYPARTH |
| dc.rights.none.fl_str_mv |
Copyright © 2019, Springer Nature info:eu-repo/semantics/openAccess |
| rights_invalid_str_mv |
Copyright © 2019, Springer Nature |
| eu_rights_str_mv |
openAccess |
| dc.format.none.fl_str_mv |
35 |
| dc.publisher.none.fl_str_mv |
Nature Research |
| publisher.none.fl_str_mv |
Nature Research |
| dc.source.none.fl_str_mv |
reponame:Recercat. Dipósit de la Recerca de Catalunya instname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya) |
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Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya) |
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Recercat. Dipósit de la Recerca de Catalunya |
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Recercat. Dipósit de la Recerca de Catalunya |
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